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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q1g MTI Purine nucleoside phosphorylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1q1g MTIPurine nucleoside phosphorylase / 0.881
1nw4 IMHPurine nucleoside phosphorylase / 0.762
1k9s FM2Purine nucleoside phosphorylase DeoD-type / 0.727
3fow IMHPurine nucleoside phosphorylase / 0.710
2bsx NOSPurine nucleoside phosphorylase / 0.688
1je1 GMPPurine nucleoside phosphorylase / 0.679
3eei MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.673
2i4t UA2Purine nucleoside phosphorylase, putative / 0.672
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.669
1k9s FM1Purine nucleoside phosphorylase DeoD-type / 0.664
1pr1 FMBPurine nucleoside phosphorylase DeoD-type / 0.660
1odi ADNPurine nucleoside phosphorylase / 0.659
4bmz MTAAminodeoxyfutalosine nucleosidase / 0.656
1a69 FMBPurine nucleoside phosphorylase DeoD-type / 0.655
1tgv 5UDUridine phosphorylase 2.4.2.3 0.655
3faz NOSPurine nucleoside phosphorylase / 0.655
4da8 BG2Purine nucleoside phosphorylase DeoD-type 2.4.2.1 0.654
4dae 6CRPurine nucleoside phosphorylase DeoD-type 2.4.2.1 0.653