2.470 Å
X-ray
2012-03-14
Name: | Polymerase acidic protein |
---|---|
ID: | Q5EP34_9INFA |
AC: | Q5EP34 |
Organism: | Influenza A virus ) |
Reign: | Viruses |
TaxID: | 284218 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 44.223 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 16 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.669 | 1110.375 |
% Hydrophobic | % Polar |
---|---|
34.35 | 65.65 |
According to VolSite |
HET Code: | DBH |
---|---|
Formula: | C7H5O4 |
Molecular weight: | 153.112 g/mol |
DrugBank ID: | DB01672 |
Buried Surface Area: | 34.76 % |
Polar Surface area: | 80.59 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-6.15418 | -16.1631 | 19.073 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O6 | NZ | LYS- 134 | 3.15 | 134.26 | H-Bond (Protein Donor) |
O3 | MN | MN- 301 | 2.48 | 0 | Metal Acceptor |
O6 | MN | MN- 301 | 2.54 | 0 | Metal Acceptor |
O9 | MN | MN- 302 | 2.13 | 0 | Metal Acceptor |
O3 | MN | MN- 302 | 2.13 | 0 | Metal Acceptor |
O6 | O | HOH- 401 | 3.02 | 139.1 | H-Bond (Ligand Donor) |