2.470 Å
X-ray
2012-03-14
| Name: | Polymerase acidic protein |
|---|---|
| ID: | Q5EP34_9INFA |
| AC: | Q5EP34 |
| Organism: | Influenza A virus ) |
| Reign: | Viruses |
| TaxID: | 284218 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 44.223 |
|---|---|
| Number of residues: | 19 |
| Including | |
| Standard Amino Acids: | 16 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.669 | 1110.375 |
| % Hydrophobic | % Polar |
|---|---|
| 34.35 | 65.65 |
| According to VolSite | |

| HET Code: | DBH |
|---|---|
| Formula: | C7H5O4 |
| Molecular weight: | 153.112 g/mol |
| DrugBank ID: | DB01672 |
| Buried Surface Area: | 34.76 % |
| Polar Surface area: | 80.59 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -6.15418 | -16.1631 | 19.073 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O6 | NZ | LYS- 134 | 3.15 | 134.26 | H-Bond (Protein Donor) |
| O3 | MN | MN- 301 | 2.48 | 0 | Metal Acceptor |
| O6 | MN | MN- 301 | 2.54 | 0 | Metal Acceptor |
| O9 | MN | MN- 302 | 2.13 | 0 | Metal Acceptor |
| O3 | MN | MN- 302 | 2.13 | 0 | Metal Acceptor |
| O6 | O | HOH- 401 | 3.02 | 139.1 | H-Bond (Ligand Donor) |