1.190 Å
X-ray
2007-12-11
Name: | Queuine tRNA-ribosyltransferase |
---|---|
ID: | TGT_ZYMMO |
AC: | P28720 |
Organism: | Zymomonas mobilis subsp. mobilis |
Reign: | Bacteria |
TaxID: | 264203 |
EC Number: | 2.4.2.29 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 21.726 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.327 | 337.500 |
% Hydrophobic | % Polar |
---|---|
54.00 | 46.00 |
According to VolSite |
HET Code: | PRF |
---|---|
Formula: | C7H10N5O |
Molecular weight: | 180.187 g/mol |
DrugBank ID: | DB03304 |
Buried Surface Area: | 59.73 % |
Polar Surface area: | 110.91 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 4 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
17.089 | 16.8452 | 21.4859 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N1 | OD2 | ASP- 156 | 2.97 | 175.86 | H-Bond (Ligand Donor) |
N2 | OD1 | ASP- 156 | 2.91 | 151.41 | H-Bond (Ligand Donor) |
O6 | NE2 | GLN- 203 | 3.37 | 138.75 | H-Bond (Protein Donor) |
O6 | N | GLY- 230 | 3 | 144.96 | H-Bond (Protein Donor) |
N11 | O | LEU- 231 | 2.77 | 164.49 | H-Bond (Ligand Donor) |
N11 | O | MET- 260 | 2.9 | 140.65 | H-Bond (Ligand Donor) |
N9 | O | HOH- 1343 | 3.25 | 161.17 | H-Bond (Ligand Donor) |