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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bldPRFQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bldPRFQueuine tRNA-ribosyltransferase2.4.2.291.000
3bloQEIQueuine tRNA-ribosyltransferase2.4.2.290.636
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.628
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.609
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.539
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.290.532
5dp2NAPCurF/0.495
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.485
3oafOAGDihydrofolate reductase1.5.1.30.476
4eb5PLPCysteine desulfurase IscS 2/0.474
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.473
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.472
3iktNADRedox-sensing transcriptional repressor Rex/0.469
4s1iPLPPyridoxal kinase, putative/0.469
3bi6396Wee1-like protein kinase2.7.10.20.467
3b7dCNIGlutamate receptor 2/0.466
3l9mL9McAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.466
1pqc444Oxysterols receptor LXR-beta/0.465
1odjGMPPurine nucleoside phosphorylase/0.464
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.464
1fw0KAIGlutamate receptor 2/0.461
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.459
1wkhPPE[LysW]-aminoadipate semialdehyde transaminase/0.459
1jdzFMBPurine nucleoside phosphorylase/0.458
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.458
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
1vbiNADMalate/L-lactate dehydrogenase family protein/0.457
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.457
2ejzSAHDiphthine synthase/0.456
3arvSAUChitinase A/0.456
2g8yNADHydroxycarboxylate dehydrogenase B/0.455
3fhxPXLPyridoxal kinase2.7.1.350.455
4eb7PLPCysteine desulfurase IscS 2/0.452
1je1GMPPurine nucleoside phosphorylase/0.451
1hfqMOTDihydrofolate reductase1.5.1.30.450
4bfxZVXPantothenate kinase2.7.1.330.450
1b9iPXG3-amino-5-hydroxybenzoate synthase4.2.1.1440.448
1ftlDNQGlutamate receptor 2/0.448
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.448
4bubADPUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase/0.448
1giqNAIIota toxin component Ia/0.447
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.447
3ihgVAKAklavinone 12-hydroxylase RdmE/0.447
2fjm073Tyrosine-protein phosphatase non-receptor type 13.1.3.480.445
4z87GDPInosine-5'-monophosphate dehydrogenase/0.444
5jscFADPutative acyl-CoA dehydrogenase/0.444
1pr4MTPPurine nucleoside phosphorylase DeoD-type/0.443
1zklIBMHigh affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A3.1.4.530.443
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.442
3tvxPNXcAMP-specific 3',5'-cyclic phosphodiesterase 4A3.1.4.530.442
4llkMEWcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
1jqdSAHHistamine N-methyltransferase2.1.1.80.441
1ygkRRCPyridoxal kinase2.7.1.350.441
2jddACOProbable acetyltransferase/0.441
2pbwDOQGlutamate receptor ionotropic, kainate 1/0.441
3d5wADPSerine/threonine-protein kinase PLK/0.441
3o4rNAPDehydrogenase/reductase SDR family member 41.1.1.1840.441
4bfuZVUPantothenate kinase2.7.1.330.441
4bfvZVVPantothenate kinase2.7.1.330.441
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.440
1uaeUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.440