2.400 Å
X-ray
2003-06-19
| Name: | Purine nucleoside phosphorylase DeoD-type |
|---|---|
| ID: | DEOD_ECO57 |
| AC: | P0ABP9 |
| Organism: | Escherichia coli O157:H7 |
| Reign: | Bacteria |
| TaxID: | 83334 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 18.668 |
|---|---|
| Number of residues: | 28 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.647 | 722.250 |
| % Hydrophobic | % Polar |
|---|---|
| 50.00 | 50.00 |
| According to VolSite | |

| HET Code: | MTP |
|---|---|
| Formula: | C11H14N4O4S |
| Molecular weight: | 298.318 g/mol |
| DrugBank ID: | DB02896 |
| Buried Surface Area: | 59.86 % |
| Polar Surface area: | 138.82 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 51.1295 | 50.7689 | 27.7777 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3' | CG | MET- 64 | 4.19 | 0 | Hydrophobic |
| C5' | SD | MET- 64 | 3.78 | 0 | Hydrophobic |
| C5' | CD2 | PHE- 159 | 3.79 | 0 | Hydrophobic |
| S6 | CE2 | PHE- 159 | 4.25 | 0 | Hydrophobic |
| C2' | CB | GLU- 179 | 4.16 | 0 | Hydrophobic |
| C2' | CG | MET- 180 | 3.65 | 0 | Hydrophobic |
| C3' | SD | MET- 180 | 3.73 | 0 | Hydrophobic |
| O2' | N | MET- 180 | 2.63 | 126.97 | H-Bond (Protein Donor) |
| O3' | OE1 | GLU- 181 | 3.07 | 163.92 | H-Bond (Ligand Donor) |
| O3' | OE2 | GLU- 181 | 2.98 | 129.76 | H-Bond (Ligand Donor) |
| S6 | CB | ASP- 204 | 4.35 | 0 | Hydrophobic |
| CS | CG1 | ILE- 206 | 3.4 | 0 | Hydrophobic |