2.400 Å
X-ray
2003-06-19
Name: | Purine nucleoside phosphorylase DeoD-type |
---|---|
ID: | DEOD_ECO57 |
AC: | P0ABP9 |
Organism: | Escherichia coli O157:H7 |
Reign: | Bacteria |
TaxID: | 83334 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 18.668 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.647 | 722.250 |
% Hydrophobic | % Polar |
---|---|
50.00 | 50.00 |
According to VolSite |
HET Code: | MTP |
---|---|
Formula: | C11H14N4O4S |
Molecular weight: | 298.318 g/mol |
DrugBank ID: | DB02896 |
Buried Surface Area: | 59.86 % |
Polar Surface area: | 138.82 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
51.1295 | 50.7689 | 27.7777 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3' | CG | MET- 64 | 4.19 | 0 | Hydrophobic |
C5' | SD | MET- 64 | 3.78 | 0 | Hydrophobic |
C5' | CD2 | PHE- 159 | 3.79 | 0 | Hydrophobic |
S6 | CE2 | PHE- 159 | 4.25 | 0 | Hydrophobic |
C2' | CB | GLU- 179 | 4.16 | 0 | Hydrophobic |
C2' | CG | MET- 180 | 3.65 | 0 | Hydrophobic |
C3' | SD | MET- 180 | 3.73 | 0 | Hydrophobic |
O2' | N | MET- 180 | 2.63 | 126.97 | H-Bond (Protein Donor) |
O3' | OE1 | GLU- 181 | 3.07 | 163.92 | H-Bond (Ligand Donor) |
O3' | OE2 | GLU- 181 | 2.98 | 129.76 | H-Bond (Ligand Donor) |
S6 | CB | ASP- 204 | 4.35 | 0 | Hydrophobic |
CS | CG1 | ILE- 206 | 3.4 | 0 | Hydrophobic |