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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bldPRFQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3bldPRFQueuine tRNA-ribosyltransferase2.4.2.291.000
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.639
3bloQEIQueuine tRNA-ribosyltransferase2.4.2.290.609
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.598
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.542
2ejzSAHDiphthine synthase/0.480
5dp2NAPCurF/0.477
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.290.471
1gky5GPGuanylate kinase2.7.4.80.457
3tqxPLP2-amino-3-ketobutyrate coenzyme A ligase/0.452
4kp61S1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.452
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.444
1ex75GPGuanylate kinase2.7.4.80.443
1x8b824Wee1-like protein kinase2.7.10.20.443
1xorZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441
2ivpATPtRNA N6-adenosine threonylcarbamoyltransferase/0.440
4ms1381Gamma-aminobutyric acid type B receptor subunit 1/0.440