2.400 Å
X-ray
2003-02-19
Name: | Purine nucleoside phosphorylase |
---|---|
ID: | Q5SID9_THET8 |
AC: | Q5SID9 |
Organism: | Thermus thermophilus |
Reign: | Bacteria |
TaxID: | 300852 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 88 % |
D | 12 % |
B-Factor: | 29.875 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.643 | 958.500 |
% Hydrophobic | % Polar |
---|---|
37.68 | 62.32 |
According to VolSite |
HET Code: | ADN |
---|---|
Formula: | C10H13N5O4 |
Molecular weight: | 267.241 g/mol |
DrugBank ID: | DB00640 |
Buried Surface Area: | 75.09 % |
Polar Surface area: | 139.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
7.06126 | -122.953 | -139.361 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | SD | MET- 65 | 3.96 | 0 | Hydrophobic |
C5' | CE1 | PHE- 159 | 3.61 | 0 | Hydrophobic |
C2' | CB | GLU- 179 | 4.15 | 0 | Hydrophobic |
C2' | CG | MET- 180 | 4.01 | 0 | Hydrophobic |
C3' | SD | MET- 180 | 3.52 | 0 | Hydrophobic |
O2' | N | MET- 180 | 3.08 | 152.16 | H-Bond (Protein Donor) |
O3' | OE1 | GLU- 181 | 2.52 | 172.25 | H-Bond (Protein Donor) |
N7 | ND2 | ASN- 204 | 3.1 | 163.85 | H-Bond (Protein Donor) |
N6 | OD1 | ASN- 204 | 3.28 | 156.97 | H-Bond (Ligand Donor) |