2.800 Å
X-ray
2009-01-02
Name: | Purine nucleoside phosphorylase |
---|---|
ID: | Q8I3X4_PLAF7 |
AC: | Q8I3X4 |
Organism: | Plasmodium falciparum |
Reign: | Eukaryota |
TaxID: | 36329 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 13 % |
B | 87 % |
B-Factor: | 40.314 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.053 | 685.125 |
% Hydrophobic | % Polar |
---|---|
44.33 | 55.67 |
According to VolSite |
HET Code: | IMH |
---|---|
Formula: | C11H15N4O4 |
Molecular weight: | 267.261 g/mol |
DrugBank ID: | DB06185 |
Buried Surface Area: | 70.29 % |
Polar Surface area: | 139.1 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 6 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-13.3108 | 18.1383 | 17.7968 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O5' | NE2 | HIS- 7 | 2.99 | 154.59 | H-Bond (Ligand Donor) |
C5' | CD1 | ILE- 66 | 3.77 | 0 | Hydrophobic |
C3' | CG2 | ILE- 66 | 3.86 | 0 | Hydrophobic |
C5' | CD1 | ILE- 73 | 4.43 | 0 | Hydrophobic |
C5' | CE1 | PHE- 160 | 4.13 | 0 | Hydrophobic |
C2' | CB | GLU- 182 | 4.17 | 0 | Hydrophobic |
C5' | SD | MET- 183 | 4.13 | 0 | Hydrophobic |
C3' | SD | MET- 183 | 3.89 | 0 | Hydrophobic |
C2' | CG | MET- 183 | 3.72 | 0 | Hydrophobic |
O2' | N | MET- 183 | 3.04 | 128.41 | H-Bond (Protein Donor) |
O3' | OE2 | GLU- 184 | 2.81 | 174.68 | H-Bond (Ligand Donor) |
O2' | OE1 | GLU- 184 | 2.74 | 135.28 | H-Bond (Ligand Donor) |
N7 | OD1 | ASP- 206 | 3.05 | 147.81 | H-Bond (Ligand Donor) |