1.400 Å
X-ray
2011-10-22
Name: | Purine nucleoside phosphorylase DeoD-type |
---|---|
ID: | DEOD_BACCE |
AC: | Q5EEL8 |
Organism: | Bacillus cereus |
Reign: | Bacteria |
TaxID: | 1396 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 12.450 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.784 | 297.000 |
% Hydrophobic | % Polar |
---|---|
50.00 | 50.00 |
According to VolSite |
HET Code: | NOS |
---|---|
Formula: | C10H12N4O5 |
Molecular weight: | 268.226 g/mol |
DrugBank ID: | DB04335 |
Buried Surface Area: | 62.8 % |
Polar Surface area: | 133.75 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
43.8976 | 16.9724 | 42.1023 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3' | CG | MET- 64 | 4.14 | 0 | Hydrophobic |
C5' | SD | MET- 64 | 3.8 | 0 | Hydrophobic |
C5' | CD2 | PHE- 159 | 3.71 | 0 | Hydrophobic |
C2' | CB | GLU- 179 | 4.26 | 0 | Hydrophobic |
C5' | SD | MET- 180 | 3.92 | 0 | Hydrophobic |
C2' | CG | MET- 180 | 3.85 | 0 | Hydrophobic |
C3' | CB | MET- 180 | 3.89 | 0 | Hydrophobic |
O2' | N | MET- 180 | 2.93 | 127.62 | H-Bond (Protein Donor) |
O2' | OE1 | GLU- 181 | 2.64 | 138.95 | H-Bond (Ligand Donor) |
O3' | OE2 | GLU- 181 | 2.65 | 163.17 | H-Bond (Ligand Donor) |
N7 | ND2 | ASN- 204 | 3.42 | 135.96 | H-Bond (Protein Donor) |