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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gca2X9Aldose reductase1.1.1.21

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4gca2X9Aldose reductase1.1.1.211.000
2fz9ZSTAldose reductase1.1.1.210.714
2dv0ZSTAldose reductase1.1.1.210.681
1z8962PAldose reductase1.1.1.210.680
1t40ID5Aldose reductase1.1.1.210.677
2hv5ZSTAldose reductase1.1.1.210.661
2iki388Aldose reductase1.1.1.210.660
3m64393Aldose reductase1.1.1.210.658
1t41ID5Aldose reductase1.1.1.210.653
2pdxZSTAldose reductase1.1.1.210.652
3lqlLDTAldose reductase1.1.1.210.648
3m4h388Aldose reductase1.1.1.210.643
2pdp393Aldose reductase1.1.1.210.639
3lboLDTAldose reductase1.1.1.210.637
2pdg47DAldose reductase1.1.1.210.632
2pdh47DAldose reductase1.1.1.210.629
3lenZSTAldose reductase1.1.1.210.629
2ikj393Aldose reductase1.1.1.210.623
3mb9ZSTAldose reductase1.1.1.210.623
2hvoZSTAldose reductase1.1.1.210.619
2fz8ZSTAldose reductase1.1.1.210.618
2duxZSTAldose reductase1.1.1.210.617
2pdu393Aldose reductase1.1.1.210.612
1z3n3NAAldose reductase1.1.1.210.610
3ghsLDTAldose reductase1.1.1.210.608
2pdfZSTAldose reductase1.1.1.210.606
3t423T4Aldose reductase1.1.1.210.602
2duzZSTAldose reductase1.1.1.210.597
3ghrLDTAldose reductase1.1.1.210.597
2fzdTOLAldose reductase1.1.1.210.596
2pdbZSTAldose reductase1.1.1.210.595
2i16LDTAldose reductase1.1.1.210.594
3lz5LDTAldose reductase1.1.1.210.594
1pwlBFIAldose reductase1.1.1.210.593
3ld5LDTAldose reductase1.1.1.210.591
2i17LDTAldose reductase1.1.1.210.590
2pd5ZSTAldose reductase1.1.1.210.589
4yu153NAldose reductase1.1.1.210.585
3mc5393Aldose reductase1.1.1.210.584
3ghtLDTAldose reductase1.1.1.210.580
2ikhLITAldose reductase1.1.1.210.579
3ghuLDTAldose reductase1.1.1.210.577
1frbZSTAldose reductase-related protein 2/0.576
3g5eQ74Aldose reductase1.1.1.210.574
2pdc393Aldose reductase1.1.1.210.573
2pzn393Aldose reductase1.1.1.210.571
2qxwLDTAldose reductase1.1.1.210.566
2pdn47DAldose reductase1.1.1.210.561
2pdlTOLAldose reductase1.1.1.210.559
1ieiZESAldose reductase1.1.1.210.557
1us0LDTAldose reductase1.1.1.210.555
2pdq47DAldose reductase1.1.1.210.540
2agtFIDAldose reductase1.1.1.210.537
1ah3TOLAldose reductase1.1.1.210.524
2pdj393Aldose reductase1.1.1.210.506
2pdyFIDAldose reductase1.1.1.210.506
2inzOHPAldose reductase1.1.1.210.503
2f2kTGGAldose reductase1.1.1.210.502
1el3I84Aldose reductase1.1.1.210.499
2iqdLPAAldose reductase1.1.1.210.492
5liu388Aldo-keto reductase family 1 member B101.1.10.487
3g493G4Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.484
1ekoI84Aldose reductase1.1.1.210.483
2nvcITAAldose reductase1.1.1.210.478
3w2eFADNADH-cytochrome b5 reductase 31.6.2.20.477
1e1fPSG4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic3.2.1.1820.476
4d2dALA_ALA_ALADi-or tripeptide:H+ symporter/0.475
2fzbTOLAldose reductase1.1.1.210.472
3aivHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic3.2.1.1820.472
4ga8SBIAldo-keto reductase family 1 member B101.1.10.472
1v08NTZ4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic3.2.1.1820.470
2xupTZ5Acetylcholinesterase3.1.1.70.470
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.468
4k4eK4ETankyrase-12.4.2.300.467
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.466
2aotSAHHistamine N-methyltransferase2.1.1.80.465
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.464
2pdwFIDAldose reductase1.1.1.210.464
2c1zKMPAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.463
1p91SAM23S rRNA (guanine(745)-N(1))-methyltransferase/0.462
3mjrAC2Deoxycytidine kinase2.7.1.740.462
3r6iJMSAldo-keto reductase family 1 member C3/0.462
3uzzTES3-oxo-5-beta-steroid 4-dehydrogenase/0.458
1pj6FOLDimethylglycine oxidase1.5.3.100.456
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.455
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.455
2v0mKLNCytochrome P450 3A4/0.455
1x8lOXRRetinol dehydratase/0.454
1xf0ASDAldo-keto reductase family 1 member C3/0.454
3aiqHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1b, chloroplastic3.2.1.1820.454
1ry8RUTAldo-keto reductase family 1 member C3/0.453
4ea2RWZDehydrosqualene synthase/0.453
2c1zU2FAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.452
2d06ESTSulfotransferase 1A12.8.2.10.452
3f3y4OABile salt sulfotransferase2.8.2.140.452
4mt92D6Tankyrase-12.4.2.300.452
1esmCOAPantothenate kinase2.7.1.330.451
1s2cFLFAldo-keto reductase family 1 member C3/0.450
2bjsACVIsopenicillin N synthase1.21.3.10.450
3ghvGHCDihydrofolate reductase1.5.1.30.450
4dbw511Aldo-keto reductase family 1 member C3/0.450
4u95MIYMultidrug efflux pump subunit AcrB/0.450
2ourCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.449
2vroNDP3,4-dehydroadipyl-CoA semialdehyde dehydrogenase/0.449
3af4GCPPantothenate kinase2.7.1.330.449
3fvuIACKynurenine--oxoglutarate transaminase 12.6.1.70.449
3dopNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.448
3p9tTCLRepressor/0.448
3uzxAOX3-oxo-5-beta-steroid 4-dehydrogenase/0.448
4ea13RXDehydrosqualene synthase/0.448
1xorZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.447
3fznD7KBenzoylformate decarboxylase4.1.1.70.447
3ntqNADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase1.1.1.180.447
4pnmNU1Tankyrase-22.4.2.300.447
2wu4HBPAcetylcholinesterase3.1.1.70.446
3e4vFMNUncharacterized protein/0.446
3uzzASD3-oxo-5-beta-steroid 4-dehydrogenase/0.446
4bj9UHBTankyrase-22.4.2.300.446
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.446
4li61XOTankyrase-12.4.2.300.446
4msk2C8Tankyrase-12.4.2.300.446
3emlZMAAdenosine receptor A2a/0.446
2j9fTHV2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial1.2.4.40.445
2j9fTHV2-oxoisovalerate dehydrogenase subunit beta, mitochondrial1.2.4.40.445
2xi4AFTAcetylcholinesterase3.1.1.70.445
1e66HUXAcetylcholinesterase3.1.1.70.444
2f3815MAldo-keto reductase family 1 member C3/0.444
2is72CLAldose reductase1.1.1.210.444
3g4kROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
3v35NTIAldose reductase1.1.1.210.444
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.444
4zasTYDCalS13/0.444
4u163C0Muscarinic acetylcholine receptor M3/0.444
1y2e5DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
1yw7A41Methionine aminopeptidase 2/0.443
1zq5E04Aldo-keto reductase family 1 member C3/0.443
2xuiTZ5Acetylcholinesterase3.1.1.70.443
3c1oNAPEugenol synthase/0.443
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.443
4g2wNI0cGMP-specific 3',5'-cyclic phosphodiesterase/0.443
1lnmDTXBilin-binding protein/0.442
1ry0PG2Aldo-keto reductase family 1 member C3/0.442
1tfz8694-hydroxyphenylpyruvate dioxygenase1.13.11.270.442
2y6fM9FIsopenicillin N synthase1.21.3.10.442
3r58NPSAldo-keto reductase family 1 member C3/0.442
4bftZVTPantothenate kinase2.7.1.330.442
4ey6GNTAcetylcholinesterase3.1.1.70.442
4ey7E20Acetylcholinesterase3.1.1.70.442
4wljIK2Kynurenine--oxoglutarate transaminase 12.6.1.70.442
3acy702Dehydrosqualene synthase/0.441
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.441
4x7uZM3Mycinamicin III 3''-O-methyltransferase2.1.1.2370.441
5c1gGDUHisto-blood group ABO system transferase/0.441
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
3zkuHCVIsopenicillin N synthase1.21.3.10.440
4l8vNAPInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase1.1.1.180.440