1.600 Å
X-ray
2008-04-09
Name: | 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase |
---|---|
ID: | Q13WK4_BURXL |
AC: | Q13WK4 |
Organism: | Burkholderia xenovorans |
Reign: | Bacteria |
TaxID: | 266265 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 17.290 |
---|---|
Number of residues: | 41 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 4 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.582 | 452.250 |
% Hydrophobic | % Polar |
---|---|
46.27 | 53.73 |
According to VolSite |
HET Code: | NDP |
---|---|
Formula: | C21H26N7O17P3 |
Molecular weight: | 741.389 g/mol |
DrugBank ID: | DB02338 |
Buried Surface Area: | 36.92 % |
Polar Surface area: | 404.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 22 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
-1.95358 | -4.93581 | 22.8758 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1B | CG2 | ILE- 155 | 3.86 | 0 | Hydrophobic |
C4B | CG2 | ILE- 155 | 3.89 | 0 | Hydrophobic |
C4D | CE2 | PHE- 158 | 3.93 | 0 | Hydrophobic |
O3B | NZ | LYS- 182 | 2.84 | 126.73 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 182 | 3.3 | 158.51 | H-Bond (Protein Donor) |
O3X | NZ | LYS- 182 | 2.81 | 0 | Ionic (Protein Cationic) |
C1B | CB | SER- 216 | 4.4 | 0 | Hydrophobic |
N3A | OG | SER- 216 | 3.12 | 147.55 | H-Bond (Protein Donor) |
O1X | N | SER- 216 | 2.86 | 159.52 | H-Bond (Protein Donor) |
C4B | CE1 | PHE- 231 | 4.35 | 0 | Hydrophobic |
C3D | CB | SER- 234 | 4.38 | 0 | Hydrophobic |
C5N | CB | SER- 234 | 3.79 | 0 | Hydrophobic |
O1A | OG1 | THR- 237 | 2.97 | 167.07 | H-Bond (Protein Donor) |
N1A | O | HOH- 2171 | 3.24 | 179.95 | H-Bond (Protein Donor) |
O3B | O | HOH- 2326 | 2.52 | 156.14 | H-Bond (Ligand Donor) |