Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ffpLC1Carbonic anhydrase 24.2.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
3ffpLC1Carbonic anhydrase 24.2.1.11.000
2eu3FF3Carbonic anhydrase 24.2.1.10.819
1if6FBUCarbonic anhydrase 24.2.1.10.804
3sbiE90Carbonic anhydrase 24.2.1.10.791
4kniE1ECarbonic anhydrase 24.2.1.10.791
1g52F2BCarbonic anhydrase 24.2.1.10.774
3b4fTUOCarbonic anhydrase 24.2.1.10.766
3eft3BSCarbonic anhydrase 24.2.1.10.764
1oq5CELCarbonic anhydrase 24.2.1.10.747
3m2nJ74Carbonic anhydrase 24.2.1.10.743
3s8xE59Carbonic anhydrase 24.2.1.10.742
3s9tE49Carbonic anhydrase 24.2.1.10.742
1zsbAZMCarbonic anhydrase 24.2.1.10.739
3nb5R21Carbonic anhydrase 24.2.1.10.734
3m98E02Carbonic anhydrase 24.2.1.10.722
2wehFB1Carbonic anhydrase 24.2.1.10.714
1g54FFBCarbonic anhydrase 24.2.1.10.713
3k2fNKXCarbonic anhydrase 24.2.1.10.709
3saxE50Carbonic anhydrase 24.2.1.10.701
4itp1GDCarbonic anhydrase 24.2.1.10.700
3dd82C7Carbonic anhydrase 24.2.1.10.694
3m96E38Carbonic anhydrase 24.2.1.10.689
3m2yBE0Carbonic anhydrase 24.2.1.10.686
4knjE1FCarbonic anhydrase 24.2.1.10.686
3m5eJDRCarbonic anhydrase 24.2.1.10.685
3sbhE65Carbonic anhydrase 24.2.1.10.681
2h15B19Carbonic anhydrase 24.2.1.10.680
2powI7CCarbonic anhydrase 24.2.1.10.679
3m40J45Carbonic anhydrase 24.2.1.10.679
3mhiJ90Carbonic anhydrase 24.2.1.10.678
1i8zINLCarbonic anhydrase 24.2.1.10.671
1g45FSBCarbonic anhydrase 24.2.1.10.670
3qykIE2Carbonic anhydrase 24.2.1.10.670
2x7tWZBCarbonic anhydrase 24.2.1.10.669
3f4xKLTCarbonic anhydrase 24.2.1.10.667
3m67E36Carbonic anhydrase 24.2.1.10.663
1g4jFFBCarbonic anhydrase 24.2.1.10.662
3hkuTORCarbonic anhydrase 24.2.1.10.662
1kwrSG2Carbonic anhydrase 24.2.1.10.660
3mnaDWHCarbonic anhydrase 24.2.1.10.660
1if4FBSCarbonic anhydrase 24.2.1.10.659
1bnmAL8Carbonic anhydrase 24.2.1.10.656
3po6DT9Carbonic anhydrase 24.2.1.10.652
1kwqSG1Carbonic anhydrase 24.2.1.10.651
1g1dFSBCarbonic anhydrase 24.2.1.10.650
3mmfD9HCarbonic anhydrase 24.2.1.10.648
3n0nP9BCarbonic anhydrase 24.2.1.10.648
3t84SG6Carbonic anhydrase 24.2.1.10.648
1oklMNSCarbonic anhydrase 24.2.1.10.646
1bn4AL9Carbonic anhydrase 24.2.1.10.645
1i90INMCarbonic anhydrase 24.2.1.10.645
3mhlJ71Carbonic anhydrase 24.2.1.10.645
3oikWZBCarbonic anhydrase 24.2.1.10.645
1cnwEG1Carbonic anhydrase 24.2.1.10.641
3dcsMZMCarbonic anhydrase 24.2.1.10.638
1i9mINWCarbonic anhydrase 24.2.1.10.637
1i9nIOACarbonic anhydrase 24.2.1.10.637
3t82SG4Carbonic anhydrase 24.2.1.10.636
5fltVJJCarbonic anhydrase 24.2.1.10.634
2weoFBWCarbonic anhydrase 24.2.1.10.633
3dazMZMCarbonic anhydrase 24.2.1.10.633
3oimVZ5Carbonic anhydrase 24.2.1.10.632
4k13ETSCarbonic anhydrase 24.2.1.10.632
3oysOYSCarbonic anhydrase 24.2.1.10.626
3mhoJ43Carbonic anhydrase 24.2.1.10.625
1bnnAL1Carbonic anhydrase 24.2.1.10.624
3ni5C1HCarbonic anhydrase 24.2.1.10.624
1a42BZUCarbonic anhydrase 24.2.1.10.621
1bnvAL7Carbonic anhydrase 24.2.1.10.621
1i91INQCarbonic anhydrase 24.2.1.10.621
1ttm667Carbonic anhydrase 24.2.1.10.621
3mzcS6ICarbonic anhydrase 24.2.1.10.618
4kap1QVCarbonic anhydrase 24.2.1.10.618
1if7SBRCarbonic anhydrase 24.2.1.10.615
4m2vBZ1Carbonic anhydrase 24.2.1.10.614
2wegFBVCarbonic anhydrase 24.2.1.10.612
4iwz1GOCarbonic anhydrase 24.2.1.10.612
3t85SG7Carbonic anhydrase 24.2.1.10.610
4mo82VQCarbonic anhydrase 24.2.1.10.610
1eouSMSCarbonic anhydrase 24.2.1.10.609
4pxxCHDCarbonic anhydrase 24.2.1.10.609
1bn1AL5Carbonic anhydrase 24.2.1.10.608
1oknSTBCarbonic anhydrase 24.2.1.10.606
4ilx1EZCarbonic anhydrase 24.2.1.10.605
4itoMPXCarbonic anhydrase 24.2.1.10.605
2wejFB2Carbonic anhydrase 24.2.1.10.603
4bf6X0QCarbonic anhydrase 24.2.1.10.603
1xpz4TZCarbonic anhydrase 24.2.1.10.602
3dd0EZLCarbonic anhydrase 24.2.1.10.601
3ml2SU0Carbonic anhydrase 24.2.1.10.601
3myqE27Carbonic anhydrase 24.2.1.10.601
1ydaAZMCarbonic anhydrase 24.2.1.10.600
4m2rBZ1Carbonic anhydrase 24.2.1.10.595
2h4nAZMCarbonic anhydrase 24.2.1.10.594
3n3jWWVCarbonic anhydrase 24.2.1.10.592
1cnyEG3Carbonic anhydrase 24.2.1.10.590
3dc3AZMCarbonic anhydrase 24.2.1.10.589
3kigDA4Carbonic anhydrase 24.2.1.10.589
4n16CHDCarbonic anhydrase 24.2.1.10.588
3oy0OY0Carbonic anhydrase 24.2.1.10.587
4kp8E1GCarbonic anhydrase 124.2.1.10.585
3d8wD8WCarbonic anhydrase 24.2.1.10.582
1if8SBSCarbonic anhydrase 24.2.1.10.579
2wd2MS5Carbonic anhydrase 24.2.1.10.579
3d9zD9ZCarbonic anhydrase 24.2.1.10.579
1if5FBTCarbonic anhydrase 24.2.1.10.577
1okmSABCarbonic anhydrase 24.2.1.10.576
1bn3AL6Carbonic anhydrase 24.2.1.10.574
4kp5E1FCarbonic anhydrase 124.2.1.10.574
1g4oBSBCarbonic anhydrase 24.2.1.10.570
1cilETSCarbonic anhydrase 24.2.1.10.568
3n4bWWZCarbonic anhydrase 24.2.1.10.568
3betCTFCarbonic anhydrase 24.2.1.10.564
1jd0AZMCarbonic anhydrase 124.2.1.10.563
3mhcARZCarbonic anhydrase 24.2.1.10.562
1xq04TRCarbonic anhydrase 24.2.1.10.561
4knmE1ECarbonic anhydrase 134.2.1.10.561
3mdzEZLCarbonic anhydrase 74.2.1.10.558
1bnwTPDCarbonic anhydrase 24.2.1.10.556
3igpDT7Carbonic anhydrase 24.2.1.10.556
3zncBZ1Carbonic anhydrase 44.2.1.10.555
4ht2V50Carbonic anhydrase 124.2.1.10.554
4k0tD9ZCarbonic anhydrase 24.2.1.10.553
1bntAL2Carbonic anhydrase 24.2.1.10.552
1i9qIOFCarbonic anhydrase 24.2.1.10.548
2x7uWZACarbonic anhydrase 24.2.1.10.544
3l14I7BCarbonic anhydrase 24.2.1.10.542
3dccD9ZCarbonic anhydrase 24.2.1.10.541
3n2pAYXCarbonic anhydrase 24.2.1.10.538
4bf19FKCarbonic anhydrase 24.2.1.10.529
3f7uAG4Carbonic anhydrase 44.2.1.10.527
4lu3AZMCarbonic anhydrase 144.2.1.10.524
3bl1BL1Carbonic anhydrase 24.2.1.10.522
3v2jAZMCarbonic anhydrase 24.2.1.10.520
3p5lIT5Carbonic anhydrase 24.2.1.10.517
4x5sAZMCarbonic anhydrase (Carbonate dehydratase)/0.514
3f7bAG5Carbonic anhydrase 44.2.1.10.513
3oyqOYQCarbonic anhydrase 24.2.1.10.511
1bnqAL4Carbonic anhydrase 24.2.1.10.504
3dcwEZLCarbonic anhydrase 24.2.1.10.504
4uovAZMCarbonate dehydratase/0.499
1i9pIOECarbonic anhydrase 24.2.1.10.495
3dbuD8WCarbonic anhydrase 24.2.1.10.492
3fw3ETSCarbonic anhydrase 44.2.1.10.491
4k0zMZMCarbonic anhydrase 24.2.1.10.491
2q1qOSPCarbonic anhydrase 24.2.1.10.487
3rz8RZ8Carbonic anhydrase 24.2.1.10.486
1tllFMNNitric oxide synthase, brain1.14.13.390.485
4hu1V13Carbonic anhydrase 134.2.1.10.485
4dz7D02Carbonic anhydrase 24.2.1.10.484
1bnuAL3Carbonic anhydrase 24.2.1.10.481
3fr5I4AFatty acid-binding protein, adipocyte/0.481
2q7oIMHPurine nucleoside phosphorylase2.4.2.10.480
4kbyC2EStimulator of interferon genes protein/0.480
3h3qH13Collagen type IV alpha-3-binding protein/0.478
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.475
1rj6AZMCarbonic anhydrase 144.2.1.10.475
4knnE1FCarbonic anhydrase 134.2.1.10.472
2dvlFADAcyl-CoA dehydrogenase/0.470
4a83DXCMajor pollen allergen Bet v 1-A/0.470
1cnxEG2Carbonic anhydrase 24.2.1.10.467
3jypNADQuinate/shikimate dehydrogenase (NAD(+))/0.467
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.467
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.467
3h3sH15Collagen type IV alpha-3-binding protein/0.465
3h3t16HCollagen type IV alpha-3-binding protein/0.463
4bfvZVVPantothenate kinase2.7.1.330.463
1xe65FPPlasmepsin-23.4.23.390.462
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.462
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.461
4a802ANMajor pollen allergen Bet v 1-A/0.461
2g8yNADHydroxycarboxylate dehydrogenase B/0.460
4iae1DXAlr2278 protein/0.460
2a92NAIL-lactate dehydrogenase/0.459
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.459
2qimZEAClass 10 plant pathogenesis-related protein/0.459
3jyqNADQuinate/shikimate dehydrogenase (NAD(+))/0.459
4bfxZVXPantothenate kinase2.7.1.330.459
4nvk2NYPeroxidase/0.459
1kh3ANPArgininosuccinate synthase/0.458
3t4eNADQuinate/shikimate dehydrogenase/0.458
4boeCLRJapanin/0.458
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.458
4hp8NAP2-deoxy-D-gluconate 3-dehydrogenase/0.458
2g1n1IGRenin3.4.23.150.457
4a862ANMajor pollen allergen Bet v 1-A/0.457
4jqh1MFAlr2278 protein/0.457
4q0kGA3Phytohormone-binding protein/0.457
1o9bNAIQuinate/shikimate dehydrogenase/0.456
2zbaZBATrichothecene 3-O-acetyltransferase/0.456
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.456
4a86H35Major pollen allergen Bet v 1-A/0.455
1h50FMNPentaerythritol tetranitrate reductase/0.454
3jyoNADQuinate/shikimate dehydrogenase (NAD(+))/0.454
1xvaSAMGlycine N-methyltransferase2.1.1.200.453
2gjlFMNNitronate monooxygenase1.13.12.160.453
2rqfJH3Hemolymph juvenile hormone binding protein/0.453
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.453
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.453
1kp2ATPArgininosuccinate synthase6.3.4.50.452
2vatCOAAcetyl-CoA--deacetylcephalosporin C acetyltransferase2.3.1.1750.452
3ixp834Ecdysone receptor/0.451
3sl2ATPSensor histidine kinase WalK/0.451
2yy2IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.450
1dmyAZMCarbonic anhydrase 5A, mitochondrial4.2.1.10.449
1rszDIHPurine nucleoside phosphorylase2.4.2.10.449
3fhxPLPPyridoxal kinase2.7.1.350.449
4bfzZVZPantothenate kinase2.7.1.330.449
4mrm2BYGamma-aminobutyric acid type B receptor subunit 1/0.449
2a59LMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.448
3junAKDPhenazine biosynthesis protein A/B/0.448
3lxeTORCarbonic anhydrase 14.2.1.10.448
3own3OXRenin3.4.23.150.448
2a94AP0L-lactate dehydrogenase1.1.1.270.447
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
3vyfVYFRenin3.4.23.150.447
4xrbNDPPossible bifunctional enzyme riboflavin biosynthesis protein RibD: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino)uracil reduc/0.447
1qyxASDEstradiol 17-beta-dehydrogenase 11.1.1.620.446
1w19T5P6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.446
3fr28CAFatty acid-binding protein, adipocyte/0.446
1diuBDMDihydrofolate reductase1.5.1.30.445
1rftPXMPyridoxal kinase2.7.1.350.445
2a0yDIHPurine nucleoside phosphorylase2.4.2.10.445
2c9zQUEAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.445
2ea2F77Methionine aminopeptidase 2/0.445
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.445
3qj0QI3Botulinum neurotoxin type A3.4.24.690.445
1fm4DXCMajor pollen allergen Bet v 1-L/0.444
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.444
4iah1DXAlr2278 protein/0.444
4p9dTMPDeoxycytidylate deaminase/0.444
1gpdNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.443
1ra2FOLDihydrofolate reductase1.5.1.30.443
1s36CEIObelin/0.443
2hk9NAPShikimate dehydrogenase (NADP(+))/0.443
3af1GDPPantothenate kinase2.7.1.330.443
3w6hAZMCarbonic anhydrase 14.2.1.10.443
4h0vNADIota toxin component Ia/0.443
4relKMPGlycosyltransferase/0.443
1c9wNAPAldose reductase-related protein 2/0.442
1kkq471Peroxisome proliferator-activated receptor alpha/0.442
1npdNADQuinate/shikimate dehydrogenase/0.442
1ps9MDE2,4-dienoyl-CoA reductase1.3.1.340.442
2a1hGBNBranched-chain-amino-acid aminotransferase, mitochondrial2.6.1.420.442
2v2zADP4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.442
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
3otbDGTProbable tRNA(His) guanylyltransferase2.7.7.790.442
3s3vTOPDihydrofolate reductase1.5.1.30.442
4n1gCEIObelin/0.442
4xsvC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.442
2g20L1ARenin3.4.23.150.441
2x0iNAIMalate dehydrogenase/0.441
3fp0FP015-O-acetyltransferase/0.441
3oadLPORenin3.4.23.150.441
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.441
4i1iNADMalate dehydrogenase/0.441
1k7l544Peroxisome proliferator-activated receptor alpha/0.440
1p0pBCHCholinesterase3.1.1.80.440
1qyw5SDEstradiol 17-beta-dehydrogenase 11.1.1.620.440
2cv2GSUGlutamate--tRNA ligase6.1.1.170.440
2ea4F79Methionine aminopeptidase 2/0.440
2vigFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.10.440
3wv9FEGHmd co-occurring protein HcgE/0.440
4eywL0RCarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.440
4giu636Anthranilate phosphoribosyltransferase/0.440
4rlsNAIL-lactate dehydrogenase A chain1.1.1.270.440