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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.634
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.633
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.628
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.620
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.620
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.608
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.605
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.604
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.604
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.599
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.594
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.589
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.587
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.585
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.584
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.582
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.582
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.582
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.574
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.553
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.551
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.551
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.542
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.540
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.535
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.528
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.521
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.514
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.501
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.478
3kozZ97D-ornithine 4,5-aminomutase subunit beta/0.474
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.468
1pd9CO4Dihydrofolate reductase1.5.1.30.466
3pm1ETHTH-type transcriptional regulator QacR/0.466
3wd9QPCcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.462
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.462
4qa0SHHHistone deacetylase 83.5.1.980.460
4lrrCF9Thymidylate synthase/0.459
4qa2SHHHistone deacetylase 83.5.1.980.457
1s7gNADNAD-dependent protein deacylase 2/0.456
3nxvD2FDihydrofolate reductase1.5.1.30.456
4nmbFADBifunctional protein PutA/0.455
2fpcSCGStrictosidine synthase4.3.3.20.453
1diaL24C-1-tetrahydrofolate synthase, cytoplasmic1.5.1.50.452
1kl2FONSerine hydroxymethyltransferase/0.452
3br3ETHTH-type transcriptional regulator QacR/0.452
4iarERM5-hydroxytryptamine receptor 1B/0.450
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.450
1e8zSTUPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.449
4qg0DUTDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.449
1qxlFR8Adenosine deaminase3.5.4.40.448
1ay0TPPTransketolase 12.2.1.10.447
2xy93ESAngiotensin-converting enzyme3.2.10.447
3k9uACOSpermidine N(1)-acetyltransferase/0.447
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
1ndzFR5Adenosine deaminase3.5.4.40.446
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
4g2j0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
4jvmXDIEstrogen sulfotransferase2.8.2.40.445
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.444
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.444
4f700STCyclin-dependent kinase 82.7.11.220.444
3s7a684Dihydrofolate reductase1.5.1.30.443
3v94WYQPhosphodiesterase/0.443
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.442
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
4to2DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.442
3dd125DGlycogen phosphorylase, liver form2.4.1.10.441
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.441
4bfxZVXPantothenate kinase2.7.1.330.441
4ddrMMVDihydrofolate reductase1.5.1.30.441
1g63FMNEpidermin decarboxylase4.1.10.440
2ejzSAHDiphthine synthase/0.440
3arpDEQChitinase A/0.440
3arvSAUChitinase A/0.440
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
4amjCVDBeta-1 adrenergic receptor/0.440
4eb4D16Thymidylate synthase2.1.1.450.440
4gi2NAPCrotonyl-CoA carboxylase/reductase/0.440