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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1qgyFADFerredoxin--NADP reductase1.18.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1qgyFADFerredoxin--NADP reductase1.18.1.21.000
1h85FADFerredoxin--NADP reductase1.18.1.20.860
1qh0FADFerredoxin--NADP reductase1.18.1.20.821
1go2FADFerredoxin--NADP reductase1.18.1.20.806
1b2rFADFerredoxin--NADP reductase1.18.1.20.805
1e64FADFerredoxin--NADP reductase1.18.1.20.796
1bjkFADFerredoxin--NADP reductase1.18.1.20.728
4c43FADFerredoxin--NADP reductase1.18.1.20.668
3zbtFADFerredoxin--NADP reductase1.18.1.20.636
2b5oFADFerredoxin--NADP reductase1.18.1.20.625
1gjrFADFerredoxin--NADP reductase1.18.1.20.624
3w5uFADFerredoxin/0.624
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.622
4bprFADFerredoxin--NADP reductase1.18.1.20.619
1qgzFADFerredoxin--NADP reductase1.18.1.20.617
1e63FADFerredoxin--NADP reductase1.18.1.20.614
3zc3FADFerredoxin--NADP reductase1.18.1.20.611
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.606
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.606
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.603
1sm4FADFerredoxin--NADP reductase/0.601
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.597
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.594
3vo2FADFerredoxin--NADP reductase/0.591
1ewyFADFerredoxin--NADP reductase1.18.1.20.587
1w87FADFerredoxin--NADP reductase1.18.1.20.586
1queFADFerredoxin--NADP reductase1.18.1.20.578
4y9uFADNADPH--cytochrome P450 reductase/0.572
2rc6FADFerredoxin--NADP reductase/0.565
3qfsFADNADPH--cytochrome P450 reductase/0.565
1e62FADFerredoxin--NADP reductase1.18.1.20.560
1ogiFADFerredoxin--NADP reductase1.18.1.20.560
1w35FADFerredoxin--NADP reductase1.18.1.20.560
1gaqFADFerredoxin/0.554
1gawFADFerredoxin/0.554
1amoFADNADPH--cytochrome P450 reductase/0.547
1ogjFADFerredoxin--NADP reductase1.18.1.20.546
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.544
1h42FADFerredoxin--NADP reductase1.18.1.20.544
1ja1FADNADPH--cytochrome P450 reductase/0.539
3qe2FADNADPH--cytochrome P450 reductase/0.537
4y9rFADNADPH--cytochrome P450 reductase/0.532
4yaoFADNADPH--cytochrome P450 reductase/0.529
1gr1FADFerredoxin--NADP reductase1.18.1.20.526
3fpkFADFerredoxin-NADP reductase/0.524
4y7cFADNADPH--cytochrome P450 reductase/0.523
4yafFADNADPH--cytochrome P450 reductase/0.517
2ok8FADFerredoxin--NADP reductase, apicoplast/0.515
2rc5FADFerredoxin--NADP reductase/0.515
3ojxFADNADPH--cytochrome P450 reductase/0.515
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.514
3qftFADNADPH--cytochrome P450 reductase/0.512
1gvhFADFlavohemoprotein/0.508
3qfcFADNADPH--cytochrome P450 reductase/0.505
2bpoFADNADPH--cytochrome P450 reductase/0.502
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.496
1tllFADNitric oxide synthase, brain1.14.13.390.494
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.493
1j9zFADNADPH--cytochrome P450 reductase/0.489
1cqxFADFlavohemoprotein/0.487
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.486
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.485
2bf4FADNADPH--cytochrome P450 reductase/0.474
2piaFMNPhthalate dioxygenase reductase/0.473
4kfqKFQGlutamate receptor ionotropic, NMDA 1/0.473
2bgjFADNADPH:ferredoxin reductase/0.472
3buvNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.472
3vt7VDXVitamin D3 receptor/0.472
1f20FADNitric oxide synthase, brain1.14.13.390.471
4fk8FADFerredoxin--NADP reductase/0.469
3gwfNAPCyclohexanone monooxygenase/0.467
2vf3GVS4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.466
3n0bFADFlavin-dependent thymidylate synthase2.1.1.1480.466
2ejzSAHDiphthine synthase/0.465
2v1aFMNNPH1-1/0.465
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.465
3br3ETHTH-type transcriptional regulator QacR/0.464
5c6cCMPcGMP-dependent protein kinase 22.7.11.120.464
3rupADPBiotin carboxylase6.3.4.140.463
1x1bSAHC-20 methyltransferase/0.462
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.461
2bgiFADNADPH:ferredoxin reductase/0.461
1a8pFADFerredoxin--NADP reductase/0.459
1aquESTEstrogen sulfotransferase, testis isoform2.8.2.40.459
1pqc444Oxysterols receptor LXR-beta/0.459
3gwfFADCyclohexanone monooxygenase/0.459
4bfxZVXPantothenate kinase2.7.1.330.459
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.458
3jqrFADFerredoxin--NADP reductase, apicoplast/0.458
3q9bB3NAcetylpolyamine amidohydrolase/0.457
3rtnRTNBeta-secretase 13.4.23.460.456
2bn4FMNNADPH--cytochrome P450 reductase/0.454
2bxoOPBSerum albumin/0.454
3pqbVGPPutative oxidoreductase/0.454
5a4vQUEGlutathione S-transferase F22.5.1.180.454
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.453
2zevIPEGeranylgeranyl pyrophosphate synthase/0.453
3ihgVAKAklavinone 12-hydroxylase RdmE/0.453
3otwCOAPhosphopantetheine adenylyltransferase/0.453
5a4wQCTGlutathione S-transferase F22.5.1.180.453
1ps9MDE2,4-dienoyl-CoA reductase1.3.1.340.452
2vnhFADNADPH:ferredoxin reductase/0.452
4rkdKETAminotransferase/0.452
1fdrFADFerredoxin--NADP reductase1.18.1.20.451
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F/0.451
3ojwFMNNADPH--cytochrome P450 reductase/0.451
3wqmB29Diterpene synthase3.1.7.80.451
4bfwZVWPantothenate kinase2.7.1.330.451
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.451
4gv25MEPoly [ADP-ribose] polymerase 32.4.2.300.451
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.450
2vnkFADNADPH:ferredoxin reductase/0.450
3e6eDCSAlanine racemase/0.450
3pm1ETHTH-type transcriptional regulator QacR/0.450
4fse0VABeta-secretase 13.4.23.460.450
2iutAGSDNA translocase FtsK/0.449
2pj4414Carboxypeptidase B/0.449
3fznD7KBenzoylformate decarboxylase4.1.1.70.449
3p74FMNPentaerythritol tetranitrate reductase/0.449
4b7754MBeta-secretase 13.4.23.460.449
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.449
2z7hGG3Geranylgeranyl pyrophosphate synthase/0.448
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.448
4obwSAM2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial/0.448
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.447
1odcA8BAcetylcholinesterase3.1.1.70.447
1ozpACOMycothiol acetyltransferase2.3.1.1890.447
3ojxFMNNADPH--cytochrome P450 reductase/0.447
4a2zVIQGlycylpeptide N-tetradecanoyltransferase/0.447
4b4dFADFerredoxin-NADP reductase/0.447
1g3mPCQEstrogen sulfotransferase2.8.2.40.446
2qdxFADFerredoxin--NADP+ reductase/0.446
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.446
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
3u8l09QAcetylcholine-binding protein/0.446
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.446
1uzwCDHIsopenicillin N synthase1.21.3.10.445
2bu9HFVIsopenicillin N synthase1.21.3.10.445
3busSAHDemethylrebeccamycin-D-glucose O-methyltransferase/0.445
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
4bfuZVUPantothenate kinase2.7.1.330.445
4e32DWNMethyltransferase/0.445
1ae8AZLProthrombin3.4.21.50.444
1hzzNAPNAD(P) transhydrogenase subunit beta1.6.1.20.444
2gevCOKPantothenate kinase2.7.1.330.444
3kmyD8YBeta-secretase 13.4.23.460.444
3wleNAD(R)-specific carbonyl reductase/0.444
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.444
4n82FMNRibonucleotide reductase (NrdI family protein), putative/0.444
3ske054Genome polyprotein2.7.7.480.443
1g28FMNPHY3/0.442
4ge70K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.442
4pl0ANPMicrocin-J25 export ATP-binding/permease protein McjD/0.442
5ah5LSSLeucine--tRNA ligase/0.442
1icpFMN12-oxophytodienoate reductase 11.3.1.420.441
1ja0FADNADPH--cytochrome P450 reductase/0.441
1lnmDTXBilin-binding protein/0.441
3fr5I4AFatty acid-binding protein, adipocyte/0.441
3q43D66M1 family aminopeptidase3.4.110.441
3sqxANPATP-dependent RNA helicase MSS116, mitochondrial3.6.4.130.441
3vf60H6Glucokinase2.7.1.20.441
3zecANPAdenosine monophosphate-protein transferase SoFic2.7.7.n10.441
4dk70KSOxysterols receptor LXR-beta/0.441
4gv08MEPoly [ADP-ribose] polymerase 32.4.2.300.441
1mvtDTMDihydrofolate reductase1.5.1.30.440
1u2rSO1Elongation factor 2/0.440
2gv8NDPThiol-specific monooxygenase1.14.130.440