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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4zju NAD Enoyl-[acyl-carrier-protein] reductase [NADH]

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 1.173
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 1.042
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 1.022
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 1.013
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.999
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.986
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.963
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.952
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.947
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.943
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.941
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.941
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.936
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.929
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.919
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.912
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.910
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.906
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.902
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.900
3r3s NADPutative oxidoreductase / 0.881
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.880
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.879
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.868
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.861
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.855
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.850
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.844
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.840
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.835
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.828
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.828
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.825
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.825
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.820
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.816
3p19 NDPPutative blue fluorescent protein / 0.814
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.812
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.810
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.809
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.805
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.805
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.800
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.800
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.799
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.796
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.795
3sju NDPKeto reductase / 0.795
2jah NDPClavaldehyde dehydrogenase / 0.794
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.793
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.790
3ak4 NADNADH-dependent quinuclidinone reductase / 0.789
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.789
3s55 NADPutative short-chain dehydrogenase/reductase / 0.788
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.786
5jyd NADShort chain dehydrogenase / 0.785
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.782
3wds NADNADH-dependent quinuclidinone reductase / 0.782
1vrw NAIEnoyl-ACP reductase / 0.780
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.778
4b79 NADProbable short-chain dehydrogenase / 0.776
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.774
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.774
4dbz NDPPutative ketoacyl reductase 1.3.1 0.772
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.770
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.768
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.766
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.765
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.762
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.757
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.756
4kwh NAPReductase homolog / 0.756
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.754
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.754
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.751
4j7u NAPSepiapterin reductase 1.1.1.153 0.751
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.749
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.749
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.749
4qxm NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.749
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.749
2bd0 NAPSepiapterin reductase / 0.748
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.747
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.747
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.746
5jla NADPutative short-chain dehydrogenase/reductase / 0.746
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.745
2wsb NADGalactitol dehydrogenase / 0.745
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.743
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.743
2c29 NAPDihydroflavonol 4-reductase / 0.741
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.740
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.739
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.739
3ai2 NDPNADPH-sorbose reductase / 0.738
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.737
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.736
2nq8 ZIDEnoyl-ACP reductase / 0.733
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.732
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.732
3d3w NAPL-xylulose reductase 1.1.1.10 0.731
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.730
1zid ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.730
4wec NADShort chain dehydrogenase / 0.730
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.729
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.728
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.728
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.728
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.727
3o26 NDPSalutaridine reductase / 0.726
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.726
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.726
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.725
1x7g NAPPutative ketoacyl reductase 1.3.1 0.725
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.725
3sx2 NADUncharacterized protein / 0.724
1x7h NDPPutative ketoacyl reductase 1.3.1 0.723
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.723
4bmv NAPShort-chain dehydrogenase / 0.723
1w4z NAPPutative ketoacyl reductase 1.3.1 0.722
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.722
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.721
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.721
3bmo NAPPteridine reductase / 0.720
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.719
3tsc NADUncharacterized protein / 0.718
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.717
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.715
4hxy NDPPlm1 / 0.712
3ko8 NADNAD-dependent epimerase/dehydratase / 0.710
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.710
2dte NAIGlucose 1-dehydrogenase related protein / 0.709
3qrw NDPPutative ketoacyl reductase 1.3.1 0.709
3h4v NAPPteridine reductase 1 1.5.1.33 0.708
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.708
4o1m NADEnoyl-acyl carrier reductase / 0.708
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.707
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.706
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.705
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.705
1sby NADAlcohol dehydrogenase 1.1.1.1 0.705
1sny NAPLD36273p / 0.705
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.705
1v35 NAIEnoyl-ACP reductase / 0.704
4clo NAPPteridine reductase / 0.704
4yag NAIC alpha-dehydrogenase / 0.703
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.702
2bfo NDPPteridine reductase 1 1.5.1.33 0.702
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.701
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.700
2yy7 NADL-threonine dehydrogenase / 0.699
3uce NDPDehydrogenase / 0.699
4u7w NDPMxaA / 0.699
1ae1 NAPTropinone reductase 1 / 0.698
3geg NADShort-chain dehydrogenase/reductase SDR / 0.698
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.698
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.698
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.697
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.697
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.697
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.696
1bvr NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.695
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.695
3l77 NJPShort-chain alcohol dehydrogenase / 0.695
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.694
5d2e NAPMlnE / 0.694
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.691
3ai3 NDPNADPH-sorbose reductase / 0.691
4yai NAIC alpha-dehydrogenase / 0.687
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.686
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.685
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.685
2wdz NADGalactitol dehydrogenase / 0.684
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.684
4qed NAPElxO / 0.684
3tox NAPPutative oxidoreductase / 0.683
1zem NADXylitol dehydrogenase / 0.682
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.682
4fn4 NADShort chain dehydrogenase / 0.681
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.681
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.680
4hwk NAPSepiapterin reductase 1.1.1.153 0.678
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.677
3a9w NADNDP-sugar epimerase / 0.677
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.677
1g1a NADdTDP-glucose 4,6-dehydratase / 0.675
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.675
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.672
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.672
2yut NAPPutative short-chain oxidoreductase / 0.672
4j7x NAPSepiapterin reductase 1.1.1.153 0.672
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.672
4qec NAPElxO / 0.672
1iy8 NADLevodione reductase / 0.671
3f1k NAPUncharacterized oxidoreductase YciK 1 0.670
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.670
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.669
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.668
3wfj NAD2-dehydropantoate 2-reductase / 0.667
1orr NADCDP-paratose 2-epimerase / 0.666
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.666
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.666
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.664
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.663
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.663
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.662
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.662
2z1m NDPGDP-mannose 4,6-dehydratase / 0.661
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.661
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.660
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.660
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.659
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.658
3tn7 NJPShort-chain alcohol dehydrogenase / 0.657
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.656
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.655
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.655
1ipe NDPTropinone reductase 2 1.1.1.236 0.654
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.654
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.653
4eso NAPPutative oxidoreductase / 0.653
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.651
3aw9 NADNAD-dependent epimerase/dehydratase / 0.651
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.650
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.650