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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3syi FAD Sulfide-quinone reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3syi FADSulfide-quinone reductase / 1.143
3t14 FADSulfide-quinone reductase / 1.113
3t2k FADSulfide-quinone reductase / 1.071
3sz0 FADSulfide-quinone reductase / 1.060
3t2z FADSulfide-quinone reductase / 1.048
3kpk FADSulfide-quinone reductase / 0.949
3t2y FADSulfide-quinone reductase / 0.942
5fs8 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.770
3cgd FADCoenzyme A disulfide reductase / 0.747
4cy8 FDA2-hydroxybiphenyl-3-monooxygenase / 0.737
2xlr FADPutative flavin-containing monooxygenase / 0.735
3cgc FADCoenzyme A disulfide reductase / 0.729
4b64 FADL-ornithine N(5)-monooxygenase / 0.728
2fjd SFDAdenylylsulfate reductase, subunit A (AprA) / 0.723
3oz2 FADDigeranylgeranylglycerophospholipid reductase / 0.723
4nzh FADL-ornithine N(5)-monooxygenase / 0.719
3rha FDAPutrescine oxidase / 0.718
4b65 FADL-ornithine N(5)-monooxygenase / 0.716
1jnz FADAdenylylsulfate reductase, subunit A (AprA) / 0.715
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.714
3bg7 FADPyranose 2-oxidase / 0.713
3cgb FADCoenzyme A disulfide reductase / 0.712
3icr FADCoenzyme A disulfide reductase / 0.707
4dsh FDAUncharacterized protein / 0.705
4b63 FADL-ornithine N(5)-monooxygenase / 0.704
2qa1 FADPgaE / 0.703
4b68 FADL-ornithine N(5)-monooxygenase / 0.703
4bur FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.703
4x4j FADPutative oxygenase / 0.702
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.701
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.701
1mo9 FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.697
1f3p FADFerredoxin reductase / 0.695
3ics FADCoenzyme A disulfide reductase / 0.695
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.695
4ynt FDAGlucose oxidase, putative / 0.694
1cjc FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.693
3cge FADCoenzyme A disulfide reductase / 0.693
5cku FADL-ornithine N(5)-monooxygenase / 0.692
2gr0 FADFerredoxin reductase / 0.691
4em3 FADCoenzyme A disulfide reductase / 0.691
3ad9 NADSubunit alpha of sarocosine oxidase / 0.687
4d04 FADPhenylacetone monooxygenase 1.14.13.92 0.687
4eqw FADCoenzyme A disulfide reductase / 0.687
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.687
2cul FADGidA-related protein / 0.686
3nt6 FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.686
4eqr FADCoenzyme A disulfide reductase / 0.686
4h50 FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.686
2iid FADL-amino-acid oxidase 1.4.3.2 0.685
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.685
3f8r NAPNADH oxidase/thioredoxin reductase / 0.684
4ntc FADThioredoxin reductase gliT / 0.684
4eqs FADCoenzyme A disulfide reductase / 0.683
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.682
4h4s FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.682
4jnq FDAThioredoxin reductase / 0.682
3f8p NADNADH oxidase/thioredoxin reductase / 0.681
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.681
1tdf FADThioredoxin reductase 1.8.1.9 0.679
1trb FADThioredoxin reductase 1.8.1.9 0.679
3t37 FADPyridoxine 4-oxidase / 0.679
1pdh FASp-hydroxybenzoate hydroxylase / 0.678
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.678
2fja FADAdenylylsulfate reductase, subunit A (AprA) / 0.677
3gwd FADCyclohexanone monooxygenase / 0.676
4d03 FADPhenylacetone monooxygenase 1.14.13.92 0.675
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.674
4yxd FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.674
2v3a FADRubredoxin-NAD(+) reductase 1.18.1.1 0.673
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.673
1nhr FADNADH peroxidase 1.11.1.1 0.672
3zdn FADMonoamine oxidase N 1.4.3.4 0.671
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.670
1w4x FADPhenylacetone monooxygenase 1.14.13.92 0.670
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.669
2gv8 FADThiol-specific monooxygenase 1.14.13 0.669
4eqx FADCoenzyme A disulfide reductase / 0.669
1bzl FADTrypanothione reductase 1.8.1.12 0.668
3up5 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.668
4a6n FADTetX family tetracycline inactivation enzyme / 0.668
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.667
3atr FDAConserved Archaeal protein / 0.667
3g5s FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.667
4cnk FADL-amino acid oxidase / 0.667
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.666
3fg2 FADPutative rubredoxin reductase / 0.666
3k30 ADPHistamine dehydrogenase / 0.666
4z26 FADPutative GMC-type oxidoreductase R135 1 0.666
1ijh FADCholesterol oxidase 1.1.3.6 0.665
4em4 FADCoenzyme A disulfide reductase / 0.665
4xxg FADCholesterol oxidase 1.1.3.6 0.664
1yqz FADCoenzyme A disulfide reductase / 0.663
3cnt FADPolyamine oxidase FMS1 / 0.663
4a99 FADTetX family tetracycline inactivation enzyme / 0.663
5j60 FADThioredoxin reductase / 0.663
4b69 FADL-ornithine N(5)-monooxygenase / 0.662
4h4w FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.662
4udr FAD5-(hydroxymethyl)furfural oxidase / 0.662
1lqu FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.660
1o94 ADPTrimethylamine dehydrogenase 1.5.8.2 0.660
3jsk AHZThiamine thiazole synthase / 0.660
3nta FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.660
2eq7 NADDihydrolipoyl dehydrogenase / 0.659
4g6h FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.659
1cbo FADCholesterol oxidase 1.1.3.6 0.658
2c7g FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.658
2h94 FADLysine-specific histone demethylase 1A 1 0.658
2x3n FADProbable FAD-dependent monooxygenase / 0.658
1b4v FADCholesterol oxidase 1.1.3.6 0.657
3nn6 FB06-hydroxy-L-nicotine oxidase / 0.657
3ntd FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.657
5c3j FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.657
3awi FADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 1.5 0.656
3cnj FADCholesterol oxidase 1.1.3.6 0.656
4h2n FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.656
1d7y FADFerredoxin reductase / 0.655
3nlc FADUncharacterized protein / 0.655
3ukk FDAUDP-galactopyranose mutase / 0.655
4qi4 FADCellobiose dehydrogenase / 0.655
4xwr FADCholesterol oxidase 1.1.3.6 0.655
1e1m FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.654
4k2x FADPolyketide oxygenase/hydroxylase / 0.654
4tlx FDAKtzI / 0.654
1b8s FADCholesterol oxidase 1.1.3.6 0.653
1mxt FAECholesterol oxidase 1.1.3.6 0.653
1n4u FAECholesterol oxidase 1.1.3.6 0.653
3bi2 FADPolyamine oxidase FMS1 / 0.653
3vqr FADPutative oxidoreductase / 0.653
1n1p FADCholesterol oxidase 1.1.3.6 0.652
1n4w FADCholesterol oxidase 1.1.3.6 0.652
3mj4 FADUDP-galactopyranose mutase / 0.652
4u2s FDACholesterol oxidase 1.1.3.6 0.652
2gew FADCholesterol oxidase 1.1.3.6 0.651
2q7v FADThioredoxin reductase / 0.651
2xdo FADTetX family tetracycline inactivation enzyme / 0.651
3g5q FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.651
2gqw FADFerredoxin reductase / 0.650
3gyi FADCholesterol oxidase 1.1.3.6 0.650