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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3o03 NAP Dehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 1.119
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.799
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.796
2wsb NADGalactitol dehydrogenase / 0.784
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.781
4hxy NDPPlm1 / 0.779
3ak4 NADNADH-dependent quinuclidinone reductase / 0.778
4qec NAPElxO / 0.770
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.769
1zem NADXylitol dehydrogenase / 0.768
2c29 NAPDihydroflavonol 4-reductase / 0.768
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.768
3tsc NADUncharacterized protein / 0.765
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.765
3ko8 NADNAD-dependent epimerase/dehydratase / 0.764
1oaa NAPSepiapterin reductase 1.1.1.153 0.763
2yut NAPPutative short-chain oxidoreductase / 0.763
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.762
3icp NADNAD-dependent epimerase/dehydratase / 0.760
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.759
4b79 NADProbable short-chain dehydrogenase / 0.759
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.759
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.756
3bmo NAPPteridine reductase / 0.756
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.755
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.755
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.754
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.754
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.753
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.752
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.749
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.748
3aw9 NADNAD-dependent epimerase/dehydratase / 0.747
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.744
4kwh NAPReductase homolog / 0.744
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.743
3r3s NADPutative oxidoreductase / 0.743
4qed NAPElxO / 0.742
1sny NAPLD36273p / 0.741
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.740
4u7w NDPMxaA / 0.739
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.737
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.737
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.737
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.736
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.736
1x7g NAPPutative ketoacyl reductase 1.3.1 0.736
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.735
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.735
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.734
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.733
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.733
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.732
2p5y NADUDP-glucose 4-epimerase / 0.732
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.730
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.730
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.729
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.729
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.729
5jyd NADShort chain dehydrogenase / 0.729
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.728
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.727
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.726
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.726
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.725
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.724
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.723
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.723
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.723
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.723
5d2e NAPMlnE / 0.723
1ae1 NAPTropinone reductase 1 / 0.720
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.719
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.718
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.717
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.717
4dbz NDPPutative ketoacyl reductase 1.3.1 0.717
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.716
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.716
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.715
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.715
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.715
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.714
2wdz NADGalactitol dehydrogenase / 0.714
3a4v NADNDP-sugar epimerase / 0.714
3p19 NDPPutative blue fluorescent protein / 0.714
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.713
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.713
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.713
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.713
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.712
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.712
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.712
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.710
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.709
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.709
4clo NAPPteridine reductase / 0.709
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.708
3wds NADNADH-dependent quinuclidinone reductase / 0.708
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.708
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.708
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.707
1g1a NADdTDP-glucose 4,6-dehydratase / 0.706
3h4v NAPPteridine reductase 1 1.5.1.33 0.706
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.705
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.705
2bfo NDPPteridine reductase 1 1.5.1.33 0.704
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.704
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.704
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.703
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.703
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.702
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.702
3uce NDPDehydrogenase / 0.702
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.702
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.700
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.699
4bmv NAPShort-chain dehydrogenase / 0.699
3ai2 NDPNADPH-sorbose reductase / 0.698
3d3w NAPL-xylulose reductase 1.1.1.10 0.698
3sju NDPKeto reductase / 0.698
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.698
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.698
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.696
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.696
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.696
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.695
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.695
4j7x NAPSepiapterin reductase 1.1.1.153 0.694
1sby NADAlcohol dehydrogenase 1.1.1.1 0.693
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.693
2dte NAIGlucose 1-dehydrogenase related protein / 0.693
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.693
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.693
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.692
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.692
3sx2 NADUncharacterized protein / 0.692
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.691
2z1m NDPGDP-mannose 4,6-dehydratase / 0.691
3mje NDPAmphB / 0.691
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.690
1enp NADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.689
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.689
5jla NADPutative short-chain dehydrogenase/reductase / 0.689
4qxm NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.688
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.687
3s55 NADPutative short-chain dehydrogenase/reductase / 0.687
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.686
1orr NADCDP-paratose 2-epimerase / 0.686
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.686
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.686
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.686
3f1k NAPUncharacterized oxidoreductase YciK 1 0.685
3o26 NDPSalutaridine reductase / 0.685
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.685
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.685
2jah NDPClavaldehyde dehydrogenase / 0.684
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.683
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.683
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.682
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.682
4fn4 NADShort chain dehydrogenase / 0.682
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.681
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.679
3ai3 NDPNADPH-sorbose reductase / 0.679
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.679
1x7h NDPPutative ketoacyl reductase 1.3.1 0.677
2yy7 NADL-threonine dehydrogenase / 0.677
4imp NDPPolyketide synthase extender modules 3-4 / 0.677
1ipe NDPTropinone reductase 2 1.1.1.236 0.676
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.676
4j7u NAPSepiapterin reductase 1.1.1.153 0.676
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.674
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.674
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.673
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.673
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.673
3orf NADDihydropteridine reductase 1.5.1.34 0.673
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.673
4id9 NADPutative UDP-glucose 4-epimerase / 0.672
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.671
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.671
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.670
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.670
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.670
4yag NAIC alpha-dehydrogenase / 0.670
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.669
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.669
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.669
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.669
3tox NAPPutative oxidoreductase / 0.669
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.668
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.668
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.668
1pr9 NAPL-xylulose reductase 1.1.1.10 0.667
3a9w NADNDP-sugar epimerase / 0.667
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.667
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.666
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.665
4idg NADPutative UDP-glucose 4-epimerase / 0.665
1i3l NADUDP-glucose 4-epimerase / 0.664
1qyx NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.664
2bd0 NAPSepiapterin reductase / 0.664
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.664
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.663
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.663
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.663
1w4z NAPPutative ketoacyl reductase 1.3.1 0.662
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.661
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.661
4wec NADShort chain dehydrogenase / 0.661
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.661
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.660
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
3qrw NDPPutative ketoacyl reductase 1.3.1 0.659
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.657
3geg NADShort-chain dehydrogenase/reductase SDR / 0.657
3l77 NJPShort-chain alcohol dehydrogenase / 0.656
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.655
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.654
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.654
2p5u NADUDP-glucose 4-epimerase / 0.654
4yai NAIC alpha-dehydrogenase / 0.654
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.653
1xkq NDPUncharacterized protein / 0.653
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.653
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.653
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.653
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.653
4o1m NADEnoyl-acyl carrier reductase / 0.652
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.650
3ajr NADNDP-sugar epimerase / 0.650
3wmx NADNAD dependent epimerase/dehydratase / 0.650