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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zue ANP Arginine--tRNA ligase 6.1.1.19

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zue ANPArginine--tRNA ligase 6.1.1.19 1.022
1hpz AAPGag-Pol polyprotein 2.7.7.49 0.744
1jum BERHTH-type transcriptional regulator QacR / 0.744
1m67 BOAGlycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal 1.1.1.8 0.744
1qvu PRLHTH-type transcriptional regulator QacR / 0.744
1sa4 JANProtein farnesyltransferase subunit beta 2.5.1.58 0.744
2a3b CFFEndochitinase B1 3.2.1.14 0.744
2aou CQAHistamine N-methyltransferase 2.1.1.8 0.744
2f0y 3MNProtein farnesyltransferase subunit beta 2.5.1.58 0.744
2f98 NGVAklanonic acid methyl ester cyclase AcmA 5.5.1.23 0.744
2g97 DGBNicotinamide phosphoribosyltransferase 2.4.2.12 0.744
2iej S48Protein farnesyltransferase subunit beta 2.5.1.58 0.744
2jfz 003Glutamate racemase / 0.744
2l98 STLTroponin C, slow skeletal and cardiac muscles / 0.744
2mji KTRFatty acid-binding protein, intestinal / 0.744
2oaz I96Methionine aminopeptidase 2 / 0.744
2vcw ZZAHematopoietic prostaglandin D synthase / 0.744
2xuj TZ5Acetylcholinesterase 3.1.1.7 0.744
2ybu CX9Acidic mammalian chitinase 3.2.1.14 0.744
3arv SAUChitinase A / 0.744
3arz I5IChitinase A / 0.744
3dys IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.744
3f8c HT1Transcriptional regulator, PadR-like family / 0.744
3fnu 006HAP protein / 0.744
3gus N11Glutathione S-transferase P 2.5.1.18 0.744
3h18 PMSEsterase/lipase / 0.744
3hyw DCQSulfide-quinone reductase / 0.744
3irx UDRGag-Pol polyprotein 2.7.7.49 0.744
3k14 5352-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.744
3ksq Z96Protein farnesyltransferase subunit beta 2.5.1.58 0.744
3lg5 BTMEpi-isozizaene synthase 4.2.3.37 0.744
3mdv CL6Cholesterol 24-hydroxylase / 0.744
3n3z IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.744
3nf7 CIWGag-Pol polyprotein / 0.744
3o3j BB4Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.744
3ox3 4X4Ribosyldihydronicotinamide dehydrogenase [quinone] / 0.744
3p9t TCLRepressor / 0.744
3pz3 PZ3Geranylgeranyl transferase type-2 subunit beta 2.5.1.60 0.744
3qwh KMP17beta-hydroxysteroid dehydrogenase / 0.744
3sfx JANUncharacterized protein / 0.744
3znr NU9Histone deacetylase 7 3.5.1.98 0.744
3zns NU7Histone deacetylase 7 3.5.1.98 0.744
4b1f KRHGlutamate racemase / 0.744
4bbx LKFcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.744
4br3 U85Choline kinase alpha 2.7.1.32 0.744
4chz H75Integrase / 0.744
4dyp 0MSNucleoprotein / 0.744
4e4q RRHPeroxisome proliferator-activated receptor gamma / 0.744
4fiz CUE17beta-hydroxysteroid dehydrogenase / 0.744
4fj1 GEN17beta-hydroxysteroid dehydrogenase / 0.744
4fj2 QSO17beta-hydroxysteroid dehydrogenase / 0.744
4gtp 7TPProtein farnesyltransferase subunit beta 2.5.1.58 0.744
4hg7 NUTE3 ubiquitin-protein ligase Mdm2 6.3.2 0.744
4i8v BHFCytochrome P450 1A1 1.14.14.1 0.744
4iks TFDMethionine aminopeptidase 1 / 0.744
4lnb ED5CaaX farnesyltransferase beta subunit Ram1 / 0.744
4lng JANCaaX farnesyltransferase beta subunit Ram1 / 0.744
4ra3 TFXBeta-2-microglobulin / 0.744
5kcp PFBAlcohol dehydrogenase E chain 1.1.1.1 0.744
2g0g SP0Peroxisome proliferator-activated receptor gamma / 0.691
2g6p HM2Methionine aminopeptidase 1 / 0.691
2nq7 HM5Methionine aminopeptidase 1 / 0.691
2vcx D26Hematopoietic prostaglandin D synthase / 0.691
2wey EV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.691
3mzt TFXBeta-2-microglobulin / 0.691
3wi2 P98cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.691
4fgj 1PQRibosyldihydronicotinamide dehydrogenase [quinone] / 0.691
4iku SHXMethionine aminopeptidase 1 / 0.691
1xk9 P34Exotoxin A 2.4.2.36 0.665
1lrh NLAAuxin-binding protein 1 / 0.660
1t47 NTD4-hydroxyphenylpyruvate dioxygenase 1.13.11.27 0.660
1uof PNNDeacetoxycephalosporin C synthase 1.14.20.1 0.660
2y6d TQJMatrilysin 3.4.24.23 0.660
3cne FMNPutative protease I / 0.660
3fgo CZASarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.660
3pcn DHYProtocatechuate 3,4-dioxygenase alpha chain 1.13.11.3 0.660
3pcn DHYProtocatechuate 3,4-dioxygenase beta chain 1.13.11.3 0.660
4yp0 5IQHistidyl-tRNA synthetase, putative / 0.660
5cto NTD4-hydroxyphenylpyruvate dioxygenase 1.13.11.27 0.660
2x1l ADNMethionine--tRNA ligase / 0.658