1.600 Å
X-ray
2003-09-16
Name: | Deacetoxycephalosporin C synthase |
---|---|
ID: | CEFE_STRC2 |
AC: | P18548 |
Organism: | Streptomyces clavuligerus |
Reign: | Bacteria |
TaxID: | 443255 |
EC Number: | 1.14.20.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 31.640 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | FE2 |
Ligandability | Volume (Å3) |
---|---|
0.565 | 752.625 |
% Hydrophobic | % Polar |
---|---|
54.71 | 45.29 |
According to VolSite |
HET Code: | PNN |
---|---|
Formula: | C16H17N2O4S |
Molecular weight: | 333.382 g/mol |
DrugBank ID: | DB01053 |
Buried Surface Area: | 61.59 % |
Polar Surface area: | 114.84 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
5.19317 | 15.4785 | 59.1573 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C17 | CE1 | PHE- 164 | 4.01 | 0 | Hydrophobic |
C21 | CB | ARG- 179 | 3.45 | 0 | Hydrophobic |
C10 | CG | MET- 180 | 4.31 | 0 | Hydrophobic |
S1 | CG | MET- 180 | 3.41 | 0 | Hydrophobic |
C22 | CB | MET- 180 | 4.09 | 0 | Hydrophobic |
S1 | CG1 | VAL- 245 | 3.97 | 0 | Hydrophobic |
C21 | CG2 | VAL- 245 | 3.92 | 0 | Hydrophobic |
C9 | CG2 | VAL- 262 | 4.35 | 0 | Hydrophobic |
C10 | CG2 | ILE- 305 | 4.37 | 0 | Hydrophobic |
O13 | FE | FE2- 1311 | 2.19 | 0 | Metal Acceptor |
O12 | FE | FE2- 1311 | 1.93 | 0 | Metal Acceptor |