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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

1uof

1.600 Å

X-ray

2003-09-16

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Deacetoxycephalosporin C synthase
ID:CEFE_STRC2
AC:P18548
Organism:Streptomyces clavuligerus
Reign:Bacteria
TaxID:443255
EC Number:1.14.20.1


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:31.640
Number of residues:24
Including
Standard Amino Acids: 23
Non Standard Amino Acids: 1
Water Molecules: 0
Cofactors:
Metals: FE2

Cavity properties

LigandabilityVolume (Å3)
0.565752.625

% Hydrophobic% Polar
54.7145.29
According to VolSite

Ligand :
1uof_1 Structure
HET Code: PNN
Formula: C16H17N2O4S
Molecular weight: 333.382 g/mol
DrugBank ID: DB01053
Buried Surface Area:61.59 %
Polar Surface area: 114.84 Å2
Number of
H-Bond Acceptors: 5
H-Bond Donors: 1
Rings: 3
Aromatic rings: 1
Anionic atoms: 1
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 4

Mass center Coordinates

XYZ
5.1931715.478559.1573


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C17CE1PHE- 1644.010Hydrophobic
C21CBARG- 1793.450Hydrophobic
C10CGMET- 1804.310Hydrophobic
S1CGMET- 1803.410Hydrophobic
C22CBMET- 1804.090Hydrophobic
S1CG1VAL- 2453.970Hydrophobic
C21CG2VAL- 2453.920Hydrophobic
C9CG2VAL- 2624.350Hydrophobic
C10CG2ILE- 3054.370Hydrophobic
O13FEFE2- 13112.190Metal Acceptor
O12FEFE2- 13111.930Metal Acceptor