2.750 Å
X-ray
2012-08-29
| Name: | Protein farnesyltransferase subunit beta |
|---|---|
| ID: | FNTB_RAT |
| AC: | Q02293 |
| Organism: | Rattus norvegicus |
| Reign: | Eukaryota |
| TaxID: | 10116 |
| EC Number: | 2.5.1.58 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 6 % |
| B | 94 % |
| B-Factor: | 35.694 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.563 | 681.750 |
| % Hydrophobic | % Polar |
|---|---|
| 43.56 | 56.44 |
| According to VolSite | |

| HET Code: | 7TP |
|---|---|
| Formula: | C33H32N4O6S |
| Molecular weight: | 612.695 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 47.52 % |
| Polar Surface area: | 126.49 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 1 |
| Rings: | 6 |
| Aromatic rings: | 5 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 9 |
| X | Y | Z |
|---|---|---|
| 51.3104 | 51.7714 | -4.18725 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAQ | CD2 | LEU- 96 | 4.02 | 0 | Hydrophobic |
| CAX | CH2 | TRP- 106 | 3.86 | 0 | Hydrophobic |
| CAH | CD | ARG- 202 | 4.07 | 0 | Hydrophobic |
| CAX | CD1 | TYR- 361 | 3.71 | 0 | Hydrophobic |
| CAZ | CZ | TYR- 361 | 3.96 | 0 | Hydrophobic |
| CAW | CE1 | TYR- 361 | 3.84 | 0 | Hydrophobic |
| CAV | CB | TYR- 361 | 3.44 | 0 | Hydrophobic |
| NBA | ZN | ZN- 501 | 1.98 | 0 | Metal Acceptor |
| DuAr | ZN | ZN- 501 | 3.11 | 88.84 | Pi/Cation |