2.300 Å
X-ray
2009-12-31
Name: | Methionine--tRNA ligase |
---|---|
ID: | A0R3E2_MYCS2 |
AC: | A0R3E2 |
Organism: | Mycobacterium smegmatis 155) |
Reign: | Bacteria |
TaxID: | 246196 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 19.875 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.110 | 270.000 |
% Hydrophobic | % Polar |
---|---|
55.00 | 45.00 |
According to VolSite |
HET Code: | ADN |
---|---|
Formula: | C10H13N5O4 |
Molecular weight: | 267.241 g/mol |
DrugBank ID: | DB00640 |
Buried Surface Area: | 73.17 % |
Polar Surface area: | 139.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
6.50405 | 27.2624 | -20.6618 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3' | CB | ALA- 10 | 4.02 | 0 | Hydrophobic |
C5' | CB | ALA- 12 | 3.71 | 0 | Hydrophobic |
O3' | OE2 | GLU- 25 | 2.78 | 173.2 | H-Bond (Ligand Donor) |
O3' | N | GLY- 263 | 2.99 | 152.74 | H-Bond (Protein Donor) |
O2' | OD1 | ASP- 265 | 2.74 | 163.56 | H-Bond (Ligand Donor) |
C3' | CD1 | ILE- 266 | 3.98 | 0 | Hydrophobic |
DuAr | DuAr | TRP- 294 | 3.62 | 0 | Aromatic Face/Face |
C2' | CZ3 | TRP- 294 | 4 | 0 | Hydrophobic |
N6 | O | LEU- 295 | 3.24 | 149.34 | H-Bond (Ligand Donor) |
N1 | N | LEU- 295 | 3.04 | 161.28 | H-Bond (Protein Donor) |
O5' | OXT | MET- 600 | 3.17 | 166.39 | H-Bond (Ligand Donor) |