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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2x1l ADN Methionine--tRNA ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2x1l ADNMethionine--tRNA ligase / 0.919
1pg2 ADNMethionine--tRNA ligase 6.1.1.10 0.731
3vas ADNPutative adenosine kinase / 0.675
5jr3 SAHCarminomycin 4-O-methyltransferase DnrK 2.1.1.292 0.671
2pkm ADNAdenosine kinase 2.7.1.20 0.659
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.659
1vhz APRADP compounds hydrolase NudE 3.6.1 0.658
2zue ANPArginine--tRNA ligase 6.1.1.19 0.658
1pfy MSPMethionine--tRNA ligase 6.1.1.10 0.657
1pg0 MODMethionine--tRNA ligase 6.1.1.10 0.656
3k3b ADPKinesin-like protein KIF11 / 0.656
2fb2 SAMGTP 3',8-cyclase 4.1.99.18 0.655
3wv8 ATPHmd co-occurring protein HcgE / 0.653
1xwf ADNAdenosylhomocysteinase 3.3.1.1 0.650