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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ahh NAD 7-alpha-hydroxysteroid dehydrogenase 1.1.1.159

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 1.016
4fn4 NADShort chain dehydrogenase / 0.790
3geg NADShort-chain dehydrogenase/reductase SDR / 0.757
1x7g NAPPutative ketoacyl reductase 1.3.1 0.725
3qrw NDPPutative ketoacyl reductase 1.3.1 0.723
4yai NAIC alpha-dehydrogenase / 0.720
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.719
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.714
2hmv ADPKtr system potassium uptake protein A / 0.709
4dbz NDPPutative ketoacyl reductase 1.3.1 0.709
5jla NADPutative short-chain dehydrogenase/reductase / 0.707
1x7h NDPPutative ketoacyl reductase 1.3.1 0.706
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.704
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.703
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.703
4o29 SAHProtein-L-isoaspartate O-methyltransferase / 0.703
3grv ADNProbable ribosomal RNA small subunit methyltransferase A / 0.701
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.699
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.699
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.698
1iy8 NADLevodione reductase / 0.697
3grr SAHProbable ribosomal RNA small subunit methyltransferase A / 0.697
3wds NADNADH-dependent quinuclidinone reductase / 0.697
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.696
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.695
4yag NAIC alpha-dehydrogenase / 0.695
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.694
2o07 MTASpermidine synthase 2.5.1.16 0.694
5bxy SAHPutative RNA methylase family UPF0020 / 0.694
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.693
4b79 NADProbable short-chain dehydrogenase / 0.693
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.692
1qaq SFGrRNA adenine N-6-methyltransferase 2.1.1.184 0.691
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.691
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.691
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.690
5jdz SAHMethyl transferase / 0.688
1ae1 NAPTropinone reductase 1 / 0.687
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.687
3s55 NADPutative short-chain dehydrogenase/reductase / 0.687
3u4c NDPNADPH-dependent reductase BacG / 0.687
1sqf SAMRibosomal RNA small subunit methyltransferase B 2.1.1.176 0.686
1boo SAHModification methylase PvuII 2.1.1.113 0.685
1jr4 CL4Catechol O-methyltransferase 2.1.1.6 0.685
5je2 SAHMethyl transferase / 0.685
3go4 SAHUncharacterized protein / 0.684
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.684
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.683
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.683
3epp SFGmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.683
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.682
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.682
3tsc NADUncharacterized protein / 0.682
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.681
4mwz SAMPhosphoethanolamine N-methyltransferase, putative / 0.680
1oaa NAPSepiapterin reductase 1.1.1.153 0.679
2okc SAMProbable type I restriction enzyme BthVORF4518P M protein 2.1.1.72 0.679
3ai3 NDPNADPH-sorbose reductase / 0.679
3p19 NDPPutative blue fluorescent protein / 0.679
4nec SAHPutative SAM-dependent methyltransferase / 0.679
4r6x SAHPhosphoethanolamine N-methyltransferase / 0.679
4rtk SAHDNA adenine methylase 2.1.1.72 0.679
4wec NADShort chain dehydrogenase / 0.679
5dx1 SFGHistone-arginine methyltransferase CARM1 / 0.679
3r3s NADPutative oxidoreductase / 0.678
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.678
2y1w SFGHistone-arginine methyltransferase CARM1 / 0.677
4fgz SAHPhosphoethanolamine N-methyltransferase / 0.677
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.677
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.676
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.676
1xkq NDPUncharacterized protein / 0.676
2c29 NAPDihydroflavonol 4-reductase / 0.676
3a27 SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.676
3lcc SAHThiocyanate methyltransferase 1 / 0.676
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.676
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.675
1ek5 NADUDP-glucose 4-epimerase / 0.674
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.674
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.674
3l77 NJPShort-chain alcohol dehydrogenase / 0.674
3tn7 NJPShort-chain alcohol dehydrogenase / 0.674
4j7u NAPSepiapterin reductase 1.1.1.153 0.673
2zth SAMCatechol O-methyltransferase 2.1.1.6 0.672
3axs SFGtRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase / 0.672
3bwc SAMSpermidine synthase, putative / 0.671
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.671
1wy7 SAHUncharacterized protein / 0.669
2ibt NEAModification methylase TaqI 2.1.1.72 0.669
2ih2 NEAModification methylase TaqI 2.1.1.72 0.669
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.669
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.669
4gbe SAHDNA adenine methylase 2.1.1.72 0.669
4kwh NAPReductase homolog / 0.669
5je4 SAHMethyl transferase / 0.669
1qao SAMrRNA adenine N-6-methyltransferase 2.1.1.184 0.668
4obw SAM2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial / 0.668
5fa5 MTAProtein arginine N-methyltransferase 5 / 0.668
2ih5 NEAModification methylase TaqI 2.1.1.72 0.667
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.667
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.667
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.667
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.666
4yac NAIC alpha-dehydrogenase / 0.666
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.665
2qe6 SAMUncharacterized protein / 0.665
2yxl SFG450aa long hypothetical fmu protein / 0.665
4fp9 SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.665
4kwc SAHMethyltransferase domain family / 0.665
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.665
5dst SAHProtein arginine N-methyltransferase 8 2.1.1 0.665
2ore SAHDNA adenine methylase 2.1.1.72 0.664
4j7x NAPSepiapterin reductase 1.1.1.153 0.664
5e9w SAHmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.664
4b69 FADL-ornithine N(5)-monooxygenase / 0.663
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.663
4gqb 0XUProtein arginine N-methyltransferase 5 / 0.663
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.662
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.662
3sju NDPKeto reductase / 0.662
3tm4 SAMUncharacterized protein / 0.662
4hc4 SAHProtein arginine N-methyltransferase 6 / 0.662
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.662
4pyn SAHCatechol O-methyltransferase 2.1.1.6 0.662
5je3 SAHMethyl transferase / 0.662
3rw9 DSHSpermidine synthase 2.5.1.16 0.661
4c04 SFGProtein arginine N-methyltransferase 6 / 0.661
4oa5 SAHO-methyltransferase family protein / 0.661
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.661
1nbi SAMGlycine N-methyltransferase 2.1.1.20 0.660
2ewm NAD(S)-1-Phenylethanol dehydrogenase 1.1.1.311 0.660
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.660
3v97 SAHRibosomal RNA large subunit methyltransferase K/L 2.1.1.173 0.660
4nzh FADL-ornithine N(5)-monooxygenase / 0.660
1zmc NADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.659
2c31 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.659
2p35 SAHTrans-aconitate 2-methyltransferase / 0.659
3ak4 NADNADH-dependent quinuclidinone reductase / 0.659
3iv6 SAMUncharacterized protein / 0.659
4b63 FADL-ornithine N(5)-monooxygenase / 0.659
1y8q ATPSUMO-activating enzyme subunit 2 6.3.2 0.658
4uy6 SAHHistidine N-alpha-methyltransferase / 0.658
5d4v SAHUncharacterized protein MJ0489 / 0.658
2igo FADPyranose 2-oxidase / 0.657
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.657
3bmo NAPPteridine reductase / 0.657
3qow SAMHistone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.657
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.657
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.656
1jkf NADInositol-3-phosphate synthase 5.5.1.4 0.655
1p1c SAHGuanidinoacetate N-methyltransferase 2.1.1.2 0.655
1w4z NAPPutative ketoacyl reductase 1.3.1 0.655
2pt6 S4MSpermidine synthase / 0.655
4xcx SAHSmall RNA 2'-O-methyltransferase / 0.655
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.655
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.654
7mht SAHModification methylase HhaI 2.1.1.37 0.654
2i9k SAHModification methylase HhaI 2.1.1.37 0.653
2jah NDPClavaldehyde dehydrogenase / 0.653
2wsb NADGalactitol dehydrogenase / 0.653
2z6u SAHModification methylase HhaI 2.1.1.37 0.653
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.653
10mh SAHModification methylase HhaI 2.1.1.37 0.652
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.652
2bfo NDPPteridine reductase 1 1.5.1.33 0.652
2o06 MTASpermidine synthase 2.5.1.16 0.652
2vdv SAMtRNA (guanine-N(7)-)-methyltransferase / 0.652
3a4t SFGtRNA (cytosine(48)-C(5))-methyltransferase 2.1.1 0.652
4qed NAPElxO / 0.652
4u7t SAHDNA (cytosine-5)-methyltransferase 3A 2.1.1.37 0.652
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.651
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.651
3d3w NAPL-xylulose reductase 1.1.1.10 0.650
3ou7 SAMSAM-dependent methyltransferase / 0.650
3u81 SAHCatechol O-methyltransferase 2.1.1.6 0.650
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.650
4wxx SAHDNA (cytosine-5)-methyltransferase 1 2.1.1.37 0.650