Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2lzg13QE3 ubiquitin-protein ligase Mdm26.3.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
2lzg13QE3 ubiquitin-protein ligase Mdm26.3.21.000
3gphOIDCytochrome P450 2E11.14.130.500
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.495
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.488
4y8wSTRSteroid 21-hydroxylase/0.486
1vj3TABDihydrofolate reductase1.5.1.30.485
4h9814QUncharacterized protein/0.485
4j361HRKynurenine 3-monooxygenase/0.485
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.484
1yhjR6CPyridoxal kinase2.7.1.350.483
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.483
4klaCHDFerrochelatase, mitochondrial4.99.1.10.483
1ia4TQ6Dihydrofolate reductase1.5.1.30.480
3vt7VDXVitamin D3 receptor/0.479
2fzhDH1Dihydrofolate reductase1.5.1.30.478
3glmCOOGlutaconyl-CoA decarboxylase alpha subunit/0.478
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.478
5bp9SAHPutative methyltransferase protein/0.478
2ydoADNAdenosine receptor A2a/0.476
4ejgNCTCytochrome P450 2A131.14.14.10.476
4i6gFADCryptochrome-2/0.476
1ygjRMCPyridoxal kinase2.7.1.350.475
3vt8YI3Vitamin D3 receptor/0.475
1ygkRRCPyridoxal kinase2.7.1.350.473
4eh9IRGMitogen-activated protein kinase 14/0.473
3hadNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.472
3qly55VUncharacterized protein/0.472
4hw319GInduced myeloid leukemia cell differentiation protein Mcl-1/0.472
4e37NDPCatalase1.11.1.60.471
3lj3WYEPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.470
3pm0BHFCytochrome P450 1B1/0.470
4j6cSTRCytochrome P450 monooxygenase/0.470
1diuBDMDihydrofolate reductase1.5.1.30.469
1ly3COGDihydrofolate reductase1.5.1.30.468
3vt9YI4Vitamin D3 receptor/0.468
4nvk2NYPeroxidase/0.468
4o701QKBromodomain-containing protein 4/0.468
1cd2FOLDihydrofolate reductase1.5.1.30.467
2z3uCRRCytochrome P450/0.467
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.467
3ntaCOAFAD-dependent pyridine nucleotide-disulphide oxidoreductase/0.466
4ienCOAPutative acyl-CoA hydrolase/0.466
5k2cZMAAdenosine receptor A2a/0.466
1aq1STUCyclin-dependent kinase 22.7.11.220.465
1eioGCHGastrotropin/0.465
1y0s331Peroxisome proliferator-activated receptor delta/0.465
3tqhNDPQuinone oxidoreductase/0.465
4bcrWY1Peroxisome proliferator-activated receptor alpha/0.465
5dc5B3NHistone deacetylase 83.5.1.980.465
1o6qR17Squalene--hopene cyclase4.2.1.1290.464
2npnSAMPutative cobalamin synthesis related protein/0.464
4gh5NADShort-chain dehydrogenase/reductase SDR/0.464
1bwlFMNNADPH dehydrogenase 11.6.99.10.463
2g2hP16Tyrosine-protein kinase ABL12.7.10.20.463
3p9tTCLRepressor/0.463
3qpnPFKcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.463
3r8zZ63Cyclin-dependent kinase 22.7.11.220.463
4aotGW8Serine/threonine-protein kinase 102.7.11.10.463
4m11MXMProstaglandin G/H synthase 21.14.99.10.463
3tubFPUTyrosine-protein kinase SYK2.7.10.20.462
3w5p4OAVitamin D3 receptor/0.462
4bewCZASarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.462
2giuFBREstrogen receptor beta/0.461
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.461
3uli1N3Cyclin-dependent kinase 22.7.11.220.461
4ib4ERM5-hydroxytryptamine receptor 2B/0.461
1a27ESTEstradiol 17-beta-dehydrogenase 11.1.1.620.460
1ml6GBXGlutathione S-transferase A22.5.1.180.460
4a9e3PFBromodomain-containing protein 2/0.460
4lvg20ONicotinamide phosphoribosyltransferase2.4.2.120.460
2x7hPFNProstaglandin reductase 310.459
3d7tSTUTyrosine-protein kinase CSK/0.459
3pghFLPProstaglandin G/H synthase 21.14.99.10.459
2bheBRYCyclin-dependent kinase 22.7.11.220.458
2ykjYKJHeat shock protein HSP 90-alpha/0.458
3eyaTDPPyruvate dehydrogenase [ubiquinone]1.2.5.10.458
4dsbA8SAbscisic acid receptor PYL3/0.458
4ele31IDihydrofolate reductase/0.458
4h6rFDAProline dehydrogenase/0.458
1fdwESTEstradiol 17-beta-dehydrogenase 11.1.1.620.457
1iidNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.457
1q1rFADPutidaredoxin reductase1.18.1.50.457
2bu9HFVIsopenicillin N synthase1.21.3.10.457
2q5g1FAPeroxisome proliferator-activated receptor delta/0.457
3l71AZOCytochrome b/0.457
3vid4TTVascular endothelial growth factor receptor 22.7.10.10.457
4ez8DHFThymidylate synthase2.1.1.450.457
4iui1GQEstrogen receptor/0.457
4j6dTESCytochrome P450 monooxygenase/0.457
4o761M3Bromodomain-containing protein 4/0.457
4wdb2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.457
1v7aFRCAdenosine deaminase3.5.4.40.456
1xu7CPSCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.456
2fziDH3Dihydrofolate reductase1.5.1.30.456
3g4gD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.456
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.456
4i7fNVEGag-Pol polyprotein2.7.7.490.456
2p4yC03Peroxisome proliferator-activated receptor gamma/0.455
3g8eIS1Nicotinamide phosphoribosyltransferase2.4.2.120.455
3le62BZCyclin-dependent kinase 22.7.11.220.455
3lfqA28Cyclin-dependent kinase 22.7.11.220.455
4a83DXCMajor pollen allergen Bet v 1-A/0.455
4iarERM5-hydroxytryptamine receptor 1B/0.455
4jv618FRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.455
4mvh2F5cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.455
4nc3ERM5-hydroxytryptamine receptor 2B/0.455
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
1disBDMDihydrofolate reductase1.5.1.30.454
1fm69CRRetinoic acid receptor RXR-alpha/0.454
1s3yTQTDihydrofolate reductase1.5.1.30.454
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.454
2ydfIO3Serum albumin/0.454
2ydvNECAdenosine receptor A2a/0.454
3dd125DGlycogen phosphorylase, liver form2.4.1.10.454
3ibdCPZCytochrome P450 2B61.14.130.454
4eevL1XHepatocyte growth factor receptor2.7.10.10.454
4ia3BIVVitamin D3 receptor A/0.454
4l435FIRibosomal protein S6 kinase beta-12.7.11.10.454
5k2bZMAAdenosine receptor A2a/0.454
3pwhZMAAdenosine receptor A2a/0.454
1ly4COQDihydrofolate reductase1.5.1.30.453
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.453
3pm9FADPutative oxidoreductase/0.453
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.453
4iaq2GM5-hydroxytryptamine receptor 1B/0.453
4nh82LCHeat shock protein HSP 90-alpha/0.453
1errRALEstrogen receptor/0.452
2q59240Peroxisome proliferator-activated receptor gamma/0.452
2vcmM11Isopenicillin N synthase1.21.3.10.452
2vrbNAPTriphenylmethane reductase/0.452
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.452
3eej53RUncharacterized protein/0.452
3s7a684Dihydrofolate reductase1.5.1.30.452
3t14FADSulfide-quinone reductase/0.452
4caxMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.970.452
4r20AERCytochrome P450 family 17 polypeptide 2/0.452
1jioDEB6-deoxyerythronolide B hydroxylase/0.451
1og5SWFCytochrome P450 2C9/0.451
2zbzVDXVitamin D3 dihydroxylase/0.451
3bxxQUEDihydroflavonol 4-reductase1.1.1.2190.451
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.451
4a9mP9MBromodomain-containing protein 2/0.451
5dhgDGVNociceptin receptor/0.451
5k2dZMAAdenosine receptor A2a/0.451
1qiqACCIsopenicillin N synthase1.21.3.10.450
1qxlFR8Adenosine deaminase3.5.4.40.450
1rj6AZMCarbonic anhydrase 144.2.1.10.450
2wd9IBPAcyl-coenzyme A synthetase ACSM2A, mitochondrial6.2.1.20.450
2zjuIM4Acetylcholine-binding protein/0.450
3hbfMYCFlavonoid 3-O-glucosyltransferase2.4.10.450
3hcrCHDFerrochelatase, mitochondrial4.99.1.10.450
3um61CYBifunctional dihydrofolate reductase-thymidylate synthase/0.450
3zos0LIEpithelial discoidin domain-containing receptor 12.7.10.10.450
4eji0QACytochrome P450 2A131.14.14.10.450
4inb1F6Gag protein/0.450
4j6bPLOCytochrome P450 monooxygenase/0.450
4kugNAD3-hydroxybutyryl-CoA dehydrogenase/0.450
4l801VUMalyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase4.1.3.240.450
4u97STUInterleukin-1 receptor-associated kinase 42.7.11.10.450
1blzACVIsopenicillin N synthase1.21.3.10.449
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.449
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.449
2btsU32Cyclin-dependent kinase 22.7.11.220.449
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.449
2nruT12Interleukin-1 receptor-associated kinase 42.7.11.10.449
3hub469Mitogen-activated protein kinase 14/0.449
3inmNDPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.449
3mg3ECHOrange carotenoid-binding protein/0.449
4i8vBHFCytochrome P450 1A11.14.14.10.449
4xe606UDihydrofolate reductase1.5.1.30.449
3uzcT4EAdenosine receptor A2a/0.449
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.448
2oo5TXDNAD(P) transhydrogenase subunit alpha part 11.6.1.20.448
2wd4TBVAscorbate peroxidase/0.448
2znnS44Peroxisome proliferator-activated receptor alpha/0.448
3cseN22Uncharacterized protein/0.448
3dxjNE6DNA-directed RNA polymerase subunit beta/0.448
3dxjNE6DNA-directed RNA polymerase subunit beta'/0.448
3tkyN7I(Iso)eugenol O-methyltransferase2.1.1.1460.448
4elf35IDihydrofolate reductase/0.448
4ia2BIVVitamin D3 receptor A/0.448
1ie4T44Transthyretin/0.447
1j3jCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.447
1n83CLRNuclear receptor ROR-alpha/0.447
2bxmIMNSerum albumin/0.447
2oiqSTIProto-oncogene tyrosine-protein kinase Src2.7.10.20.447
2qblCAMCamphor 5-monooxygenase1.14.15.10.447
2vbdV10Isopenicillin N synthase1.21.3.10.447
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.447
3a4oSTUTyrosine-protein kinase Lyn2.7.10.20.447
3dtcVINMitogen-activated protein kinase kinase kinase 92.7.11.250.447
3h1jSMACytochrome b/0.447
3l70JZVCytochrome b/0.447
3pgqGY3Acetyl-CoA carboxylase/0.447
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
4hnc0UTMandelate racemase/0.447
4ucnMYAGlycylpeptide N-tetradecanoyltransferase/0.447
6cp4CAMCamphor 5-monooxygenase1.14.15.10.447
3emlZMAAdenosine receptor A2a/0.447
1i7gAZ2Peroxisome proliferator-activated receptor alpha/0.446
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.446
1um0FMNChorismate synthase/0.446
2c3qGTXGlutathione S-transferase theta-12.5.1.180.446
2qu6857Vascular endothelial growth factor receptor 22.7.10.10.446
3c7qXINVascular endothelial growth factor receptor 22.7.10.10.446
3cp9C19Vascular endothelial growth factor receptor 22.7.10.10.446
3gwfFADCyclohexanone monooxygenase/0.446
3kduNKSPeroxisome proliferator-activated receptor alpha/0.446
3mdvCL6Cholesterol 24-hydroxylase/0.446
3pe6ZYHMonoglyceride lipase/0.446
4c2zMYAGlycylpeptide N-tetradecanoyltransferase 1/0.446
5l7dCLRSmoothened homolog/0.446
5uviZMAAdenosine receptor A2a/0.446
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
1kzjCB3Thymidylate synthase/0.445
1olmVTQSEC14-like protein 2/0.445
2flhZEACytokinin-specific binding protein/0.445
2g97DGBNicotinamide phosphoribosyltransferase2.4.2.120.445
2po7CHDFerrochelatase, mitochondrial4.99.1.10.445
2yk2YJXHeat shock protein HSP 90-alpha/0.445
3gggNADPrephenate dehydrogenase/0.445
3hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.445
3il1B5DGlutamate receptor 2/0.445
3n0tOPYDipeptidyl peptidase 23.4.14.20.445
3oct1N1Tyrosine-protein kinase BTK2.7.10.20.445
3qgtCP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.445
3qlrNDPDihydrofolate reductase1.5.1.30.445
3r374CO4-hydroxybenzoyl-CoA thioesterase3.1.2.230.445
3r9dX6BCyclin-dependent kinase 22.7.11.220.445
3vrwYS5Vitamin D3 receptor/0.445
4bb5HD2Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.445
4h2nFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.445
4ie6UN9Alpha-ketoglutarate-dependent dioxygenase FTO/0.445
4ktf1TMCytochrome P450/0.445
4muw2F4cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.445
5bmvVLBTubulin alpha-1B chain/0.445
5bmvVLBTubulin beta chain/0.445
1luaNAPBifunctional protein MdtA1.5.1.50.444
1rx1NAPDihydrofolate reductase1.5.1.30.444
1s9pDESEstrogen-related receptor gamma/0.444
1uy8PU5Heat shock protein HSP 90-alpha/0.444
2acwUPGGlycosyltransferase/0.444
2p15EZTEstrogen receptor/0.444
3a60STURibosomal protein S6 kinase beta-12.7.11.10.444
3b9lAZZSerum albumin/0.444
3otqMZLBifunctional epoxide hydrolase 23.3.2.100.444
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.444
4e0u0MVCyclic dipeptide N-prenyltransferase/0.444
4iq71G9Mycocyclosin synthase1.14.21.90.444
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.443
2pnjCHDFerrochelatase, mitochondrial4.99.1.10.443
2qjySMACytochrome b/0.443
3a3yOBNSodium/potassium-transporting ATPase subunit alpha/0.443
3eek53SUncharacterized protein/0.443
3fl8RARDihydrofolate reductase/0.443
3t37FADPyridoxine 4-oxidase/0.443
4g2gTDHMycocyclosin synthase1.14.21.90.443
4h4xFADBiphenyl dioxygenase ferredoxin reductase subunit/0.443
4iah1DXAlr2278 protein/0.443
4jv81M1Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.443
4mxeACON-acetyltransferase ESCO12.3.10.443
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.443
1j3kWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.442
1rx8FOLDihydrofolate reductase1.5.1.30.442
2bl9CP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.442
2bxoOPBSerum albumin/0.442
2uxoTACHTH-type transcriptional regulator TtgR/0.442
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.442
2x3nFADProbable FAD-dependent monooxygenase/0.442
3lalKRVGag-Pol polyprotein2.7.7.490.442
3nmpPYVAbscisic acid receptor PYL2/0.442
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.442
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.442
4dscA8SAbscisic acid receptor PYL3/0.442
4qe6JN3Bile acid receptor/0.442
4ubsDIFPentalenic acid synthase1.14.15.110.442
1bsvNDPGDP-L-fucose synthase/0.441
1enzNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
1ikwEFZGag-Pol polyprotein2.7.7.490.441
1tg56454-hydroxyphenylpyruvate dioxygenase1.13.11.270.441
1upw444Oxysterols receptor LXR-beta/0.441
2gjlFMNNitronate monooxygenase1.13.12.160.441
2xvv9DNSerum albumin/0.441
2yeiXQIHeat shock protein HSP 90-alpha/0.441
2znq401Peroxisome proliferator-activated receptor delta/0.441
3dh7FMNIsopentenyl-diphosphate delta-isomerase/0.441
3inxJZCHeat shock protein HSP 90-alpha/0.441
3mtfA3FActivin receptor type-12.7.11.300.441
3s79ASDAromatase1.14.14.140.441
3um81CYBifunctional dihydrofolate reductase-thymidylate synthase/0.441
3vt5YI2Vitamin D3 receptor/0.441
4imoPWZProstaglandin-H2 D-isomerase5.3.99.20.441
4lxjLANLanosterol 14-alpha demethylase1.14.13.700.441
4uymVOR14-alpha sterol demethylase Cyp51B/0.441
1iyzNDPProbable quinone oxidoreductase/0.440
1ndzFR5Adenosine deaminase3.5.4.40.440
3eem53VUncharacterized protein/0.440
3g45988cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.440
3iqzH4MF420-dependent methylenetetrahydromethanopterin dehydrogenase1.5.98.10.440
3mb714ICasein kinase II subunit alpha2.7.11.10.440
3qs817DAnthranilate phosphoribosyltransferase/0.440
3zkyWT4Isopenicillin N synthase1.21.3.10.440
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.440
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.440
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.440
4ktl1CQCytochrome P450/0.440
4yt5H4MH(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338/0.440
3uzaT4GAdenosine receptor A2a/0.440