scPDB - Distribution of Binding site Similarity values of 3r9d entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3r9d	X6B	Cyclin-dependent kinase 2	2.7.11.22

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3r9d	X6B	Cyclin-dependent kinase 2	2.7.11.22	1.000
3rjc	06Z	Cyclin-dependent kinase 2	2.7.11.22	0.549
3qtr	X36	Cyclin-dependent kinase 2	2.7.11.22	0.548
3rak	03Z	Cyclin-dependent kinase 2	2.7.11.22	0.533
3rpv	26Z	Cyclin-dependent kinase 2	2.7.11.22	0.533
3s1h	56Z	Cyclin-dependent kinase 2	2.7.11.22	0.531
3ral	04Z	Cyclin-dependent kinase 2	2.7.11.22	0.527
4acm	7YG	Cyclin-dependent kinase 2	2.7.11.22	0.524
3rmf	20Z	Cyclin-dependent kinase 2	2.7.11.22	0.520
3r9h	Z67	Cyclin-dependent kinase 2	2.7.11.22	0.514
2fvd	LIA	Cyclin-dependent kinase 2	2.7.11.22	0.512
3qtz	X42	Cyclin-dependent kinase 2	2.7.11.22	0.512
2b52	D42	Cyclin-dependent kinase 2	2.7.11.22	0.508
2iw8	4SP	Cyclin-dependent kinase 2	2.7.11.22	0.507
3qxp	X64	Cyclin-dependent kinase 2	2.7.11.22	0.505
3rm6	18Z	Cyclin-dependent kinase 2	2.7.11.22	0.503
3unk	0BY	Cyclin-dependent kinase 2	2.7.11.22	0.500
3qu0	X40	Cyclin-dependent kinase 2	2.7.11.22	0.498
1ke6	LS2	Cyclin-dependent kinase 2	2.7.11.22	0.496
3sqq	99Z	Cyclin-dependent kinase 2	2.7.11.22	0.493
3qtx	X43	Cyclin-dependent kinase 2	2.7.11.22	0.492
1oiy	N41	Cyclin-dependent kinase 2	2.7.11.22	0.491
3qzg	X67	Cyclin-dependent kinase 2	2.7.11.22	0.491
1oi9	N20	Cyclin-dependent kinase 2	2.7.11.22	0.490
1urw	I1P	Cyclin-dependent kinase 2	2.7.11.22	0.490
3r83	Z14	Cyclin-dependent kinase 2	2.7.11.22	0.490
3qqk	X02	Cyclin-dependent kinase 2	2.7.11.22	0.489
2w06	FRV	Cyclin-dependent kinase 2	2.7.11.22	0.488
3lfn	A27	Cyclin-dependent kinase 2	2.7.11.22	0.486
3qtu	X44	Cyclin-dependent kinase 2	2.7.11.22	0.486
1di8	DTQ	Cyclin-dependent kinase 2	2.7.11.22	0.485
4erw	STU	Cyclin-dependent kinase 2	2.7.11.22	0.485
4fkr	45K	Cyclin-dependent kinase 2	2.7.11.22	0.483
1gih	1PU	Cyclin-dependent kinase 2	2.7.11.22	0.482
2c6o	4SP	Cyclin-dependent kinase 2	2.7.11.22	0.482
3unj	0BX	Cyclin-dependent kinase 2	2.7.11.22	0.480
1v1k	3FP	Cyclin-dependent kinase 2	2.7.11.22	0.479
2vu3	LZE	Cyclin-dependent kinase 2	2.7.11.22	0.478
1ke9	LS5	Cyclin-dependent kinase 2	2.7.11.22	0.477
2r3l	SCW	Cyclin-dependent kinase 2	2.7.11.22	0.476
2w05	FRT	Cyclin-dependent kinase 2	2.7.11.22	0.476
3rkb	12Z	Cyclin-dependent kinase 2	2.7.11.22	0.475
2iw9	4SP	Cyclin-dependent kinase 2	2.7.11.22	0.474
2w1h	L0F	Cyclin-dependent kinase 2	2.7.11.22	0.474
3ezv	EZV	Cyclin-dependent kinase 2	2.7.11.22	0.473
3py0	SU9	Cyclin-dependent kinase 2	2.7.11.22	0.473
3r6x	X84	Cyclin-dependent kinase 2	2.7.11.22	0.473
3rk9	09Z	Cyclin-dependent kinase 2	2.7.11.22	0.473
2b55	D31	Cyclin-dependent kinase 2	2.7.11.22	0.470
3rk7	08Z	Cyclin-dependent kinase 2	2.7.11.22	0.469
1g5s	I17	Cyclin-dependent kinase 2	2.7.11.22	0.468
2c6i	DT1	Cyclin-dependent kinase 2	2.7.11.22	0.468
3rni	21Z	Cyclin-dependent kinase 2	2.7.11.22	0.468
4bgh	3I6	Cyclin-dependent kinase 2	2.7.11.22	0.468
1w0x	OLO	Cyclin-dependent kinase 2	2.7.11.22	0.467
1fvt	106	Cyclin-dependent kinase 2	2.7.11.22	0.466
3roy	22Z	Cyclin-dependent kinase 2	2.7.11.22	0.466
1e9h	INR	Cyclin-dependent kinase 2	2.7.11.22	0.465
4fkq	42K	Cyclin-dependent kinase 2	2.7.11.22	0.465
2bts	U32	Cyclin-dependent kinase 2	2.7.11.22	0.464
2r3k	SCQ	Cyclin-dependent kinase 2	2.7.11.22	0.464
2r64	740	Cyclin-dependent kinase 2	2.7.11.22	0.464
4fkw	62K	Cyclin-dependent kinase 2	2.7.11.22	0.464
2w17	I19	Cyclin-dependent kinase 2	2.7.11.22	0.462
2vtp	LZ9	Cyclin-dependent kinase 2	2.7.11.22	0.461
2xmy	CDK	Cyclin-dependent kinase 2	2.7.11.22	0.461
4fkv	61K	Cyclin-dependent kinase 2	2.7.11.22	0.461
1ogu	ST8	Cyclin-dependent kinase 2	2.7.11.22	0.460
1h1r	6CP	Cyclin-dependent kinase 2	2.7.11.22	0.459
1oit	HDT	Cyclin-dependent kinase 2	2.7.11.22	0.459
2a0c	CK9	Cyclin-dependent kinase 2	2.7.11.22	0.459
3igg	EFQ	Cyclin-dependent kinase 2	2.7.11.22	0.459
4fko	20K	Cyclin-dependent kinase 2	2.7.11.22	0.459
1ke5	LS1	Cyclin-dependent kinase 2	2.7.11.22	0.458
2vto	LZ8	Cyclin-dependent kinase 2	2.7.11.22	0.458
3ddp	RC8	Cyclin-dependent kinase 2	2.7.11.22	0.458
3qxo	X65	Cyclin-dependent kinase 2	2.7.11.22	0.457
2vti	LZ3	Cyclin-dependent kinase 2	2.7.11.22	0.456
1h1s	4SP	Cyclin-dependent kinase 2	2.7.11.22	0.455
2r3j	SCJ	Cyclin-dependent kinase 2	2.7.11.22	0.455
3r8z	Z63	Cyclin-dependent kinase 2	2.7.11.22	0.455
3rpy	27Z	Cyclin-dependent kinase 2	2.7.11.22	0.455
1pkd	UCN	Cyclin-dependent kinase 2	2.7.11.22	0.454
3qzh	X69	Cyclin-dependent kinase 2	2.7.11.22	0.452
1oiq	HDU	Cyclin-dependent kinase 2	2.7.11.22	0.451
3qwk	X62	Cyclin-dependent kinase 2	2.7.11.22	0.451
4fx3	60K	Cyclin-dependent kinase 2	2.7.11.22	0.451
1y91	CT9	Cyclin-dependent kinase 2	2.7.11.22	0.449
2r3p	3SC	Cyclin-dependent kinase 2	2.7.11.22	0.449
3r28	XA0	Cyclin-dependent kinase 2	2.7.11.22	0.449
3rk5	07Z	Cyclin-dependent kinase 2	2.7.11.22	0.448
4ek8	16K	Cyclin-dependent kinase 2	2.7.11.22	0.447
1p2a	5BN	Cyclin-dependent kinase 2	2.7.11.22	0.446
4fks	46K	Cyclin-dependent kinase 2	2.7.11.22	0.446
4u97	STU	Interleukin-1 receptor-associated kinase 4	2.7.11.1	0.446
3r7v	Z02	Cyclin-dependent kinase 2	2.7.11.22	0.445
4fkp	LS5	Cyclin-dependent kinase 2	2.7.11.22	0.445
4u9a	STU	Interleukin-1 receptor-associated kinase 4	2.7.11.1	0.445
3r9o	Z71	Cyclin-dependent kinase 2	2.7.11.22	0.444
3ti1	B49	Cyclin-dependent kinase 2	2.7.11.22	0.444
4bcn	T9N	Cyclin-dependent kinase 2	2.7.11.22	0.444
4ez3	0S0	Cyclin-dependent kinase 2	2.7.11.22	0.444
1pxm	CK5	Cyclin-dependent kinase 2	2.7.11.22	0.443
1ckp	PVB	Cyclin-dependent kinase 2	2.7.11.22	0.442
2bhe	BRY	Cyclin-dependent kinase 2	2.7.11.22	0.442
3qqh	X0A	Cyclin-dependent kinase 2	2.7.11.22	0.442
3rm7	19Z	Cyclin-dependent kinase 2	2.7.11.22	0.442
3uli	1N3	Cyclin-dependent kinase 2	2.7.11.22	0.442
4ez5	0RS	Cyclin-dependent kinase 6	2.7.11.22	0.442
2uzn	C96	Cyclin-dependent kinase 2	2.7.11.22	0.441
3r71	X86	Cyclin-dependent kinase 2	2.7.11.22	0.441
1aq1	STU	Cyclin-dependent kinase 2	2.7.11.22	0.440
1ke8	LS4	Cyclin-dependent kinase 2	2.7.11.22	0.440
3qrt	X14	Cyclin-dependent kinase 2	2.7.11.22	0.440