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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3r8vZ62Cyclin-dependent kinase 22.7.11.22

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3r8vZ62Cyclin-dependent kinase 22.7.11.221.000
3rahO1ZCyclin-dependent kinase 22.7.11.220.601
1w8cN69Cyclin-dependent kinase 22.7.11.220.575
3qx2X63Cyclin-dependent kinase 22.7.11.220.573
1h0w207Cyclin-dependent kinase 22.7.11.220.558
3lfnA27Cyclin-dependent kinase 22.7.11.220.553
3qwjX6ACyclin-dependent kinase 22.7.11.220.553
3r83Z14Cyclin-dependent kinase 22.7.11.220.551
3raiX85Cyclin-dependent kinase 22.7.11.220.543
4kd11QKCyclin-dependent kinase 22.7.11.220.543
2c6o4SPCyclin-dependent kinase 22.7.11.220.541
3rm719ZCyclin-dependent kinase 22.7.11.220.539
2r64740Cyclin-dependent kinase 22.7.11.220.538
3rk909ZCyclin-dependent kinase 22.7.11.220.535
1pxmCK5Cyclin-dependent kinase 22.7.11.220.534
3rpo24ZCyclin-dependent kinase 22.7.11.220.533
3r8uZ31Cyclin-dependent kinase 22.7.11.220.531
3qxoX65Cyclin-dependent kinase 22.7.11.220.530
1e1xNW1Cyclin-dependent kinase 22.7.11.220.529
2r3iSCFCyclin-dependent kinase 22.7.11.220.529
3rpr25ZCyclin-dependent kinase 22.7.11.220.529
3r6xX84Cyclin-dependent kinase 22.7.11.220.528
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.525
3r73X87Cyclin-dependent kinase 22.7.11.220.523
3s2pPMUCyclin-dependent kinase 22.7.11.220.523
1g5sI17Cyclin-dependent kinase 22.7.11.220.521
3r71X86Cyclin-dependent kinase 22.7.11.220.521
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.520
3r9nZ68Cyclin-dependent kinase 22.7.11.220.519
4fklCK2Cyclin-dependent kinase 22.7.11.220.518
3qu0X40Cyclin-dependent kinase 22.7.11.220.516
3qqlX03Cyclin-dependent kinase 22.7.11.220.515
2a0cCK9Cyclin-dependent kinase 22.7.11.220.514
2c6kDT2Cyclin-dependent kinase 22.7.11.220.514
3sqq99ZCyclin-dependent kinase 22.7.11.220.514
1h1r6CPCyclin-dependent kinase 22.7.11.220.512
2duv371Cyclin-dependent kinase 22.7.11.220.510
2a4lRRCCyclin-dependent kinase 22.7.11.220.508
3qwkX62Cyclin-dependent kinase 22.7.11.220.507
3r8lZ30Cyclin-dependent kinase 22.7.11.220.507
2b55D31Cyclin-dependent kinase 22.7.11.220.506
3qqhX0ACyclin-dependent kinase 22.7.11.220.505
1h0vUN4Cyclin-dependent kinase 22.7.11.220.501
2w06FRVCyclin-dependent kinase 22.7.11.220.501
2w1hL0FCyclin-dependent kinase 22.7.11.220.501
2c6iDT1Cyclin-dependent kinase 22.7.11.220.500
3qtzX42Cyclin-dependent kinase 22.7.11.220.500
3rjc06ZCyclin-dependent kinase 22.7.11.220.500
2b52D42Cyclin-dependent kinase 22.7.11.220.499
2c6mDT5Cyclin-dependent kinase 22.7.11.220.499
3rm618ZCyclin-dependent kinase 22.7.11.220.499
3r1qX75Cyclin-dependent kinase 22.7.11.220.498
1ke7LS3Cyclin-dependent kinase 22.7.11.220.497
1oitHDTCyclin-dependent kinase 22.7.11.220.497
2r3r6SCCyclin-dependent kinase 22.7.11.220.495
3qzgX67Cyclin-dependent kinase 22.7.11.220.495
4acm7YGCyclin-dependent kinase 22.7.11.220.494
4eor4SPCyclin-dependent kinase 22.7.11.220.494
2c6lDT4Cyclin-dependent kinase 22.7.11.220.493
3s0o50ZCyclin-dependent kinase 22.7.11.220.493
3unj0BXCyclin-dependent kinase 22.7.11.220.493
4fko20KCyclin-dependent kinase 22.7.11.220.492
1urwI1PCyclin-dependent kinase 22.7.11.220.490
2r3gSC9Cyclin-dependent kinase 22.7.11.220.490
3iggEFQCyclin-dependent kinase 22.7.11.220.490
3lfqA28Cyclin-dependent kinase 22.7.11.220.490
3s1h56ZCyclin-dependent kinase 22.7.11.220.490
4erwSTUCyclin-dependent kinase 22.7.11.220.490
3ddpRC8Cyclin-dependent kinase 22.7.11.220.489
2r3lSCWCyclin-dependent kinase 22.7.11.220.488
3qtuX44Cyclin-dependent kinase 22.7.11.220.487
3pj8404Cyclin-dependent kinase 22.7.11.220.486
4fkq42KCyclin-dependent kinase 22.7.11.220.486
1ke6LS2Cyclin-dependent kinase 22.7.11.220.484
4fkr45KCyclin-dependent kinase 22.7.11.220.484
1gih1PUCyclin-dependent kinase 22.7.11.220.483
2exmZIPCyclin-dependent kinase 22.7.11.220.483
3qtrX36Cyclin-dependent kinase 22.7.11.220.483
1v1k3FPCyclin-dependent kinase 22.7.11.220.481
1w0xOLOCyclin-dependent kinase 22.7.11.220.479
2r3o2SCCyclin-dependent kinase 22.7.11.220.479
2w05FRTCyclin-dependent kinase 22.7.11.220.478
3r9dX6BCyclin-dependent kinase 22.7.11.220.478
3rni21ZCyclin-dependent kinase 22.7.11.220.478
2c69CT8Cyclin-dependent kinase 22.7.11.220.477
3roy22ZCyclin-dependent kinase 22.7.11.220.477
2vv9IM9Cyclin-dependent kinase 22.7.11.220.476
3rk708ZCyclin-dependent kinase 22.7.11.220.476
4lyn1YGCyclin-dependent kinase 22.7.11.220.476
1b38ATPCyclin-dependent kinase 22.7.11.220.475
2vtsLZCCyclin-dependent kinase 22.7.11.220.475
1h1s4SPCyclin-dependent kinase 22.7.11.220.474
3r7yZ04Cyclin-dependent kinase 22.7.11.220.474
3r7vZ02Cyclin-dependent kinase 22.7.11.220.472
2r3jSCJCyclin-dependent kinase 22.7.11.220.470
1hckATPCyclin-dependent kinase 22.7.11.220.469
3qzhX69Cyclin-dependent kinase 22.7.11.220.469
3sw418KCyclin-dependent kinase 22.7.11.220.469
3sw719KCyclin-dependent kinase 22.7.11.220.469
3r8pZ46Cyclin-dependent kinase 22.7.11.220.467
1ckpPVBCyclin-dependent kinase 22.7.11.220.466
1gii1PUCyclin-dependent kinase 22.7.11.220.466
1oguST8Cyclin-dependent kinase 22.7.11.220.466
3qtsX46Cyclin-dependent kinase 22.7.11.220.465
4bgh3I6Cyclin-dependent kinase 22.7.11.220.465
3rpv26ZCyclin-dependent kinase 22.7.11.220.464
2r3kSCQCyclin-dependent kinase 22.7.11.220.463
3r1sX73Cyclin-dependent kinase 22.7.11.220.463
3qruX19Cyclin-dependent kinase 22.7.11.220.462
3r28XA0Cyclin-dependent kinase 22.7.11.220.462
4ek816KCyclin-dependent kinase 22.7.11.220.462
4ez30S0Cyclin-dependent kinase 22.7.11.220.462
1oirHDYCyclin-dependent kinase 22.7.11.220.461
1pxjCK2Cyclin-dependent kinase 22.7.11.220.460
1y91CT9Cyclin-dependent kinase 22.7.11.220.460
3rmf20ZCyclin-dependent kinase 22.7.11.220.460
1oi9N20Cyclin-dependent kinase 22.7.11.220.459
2iw6QQ2Cyclin-dependent kinase 22.7.11.220.458
2r3fSC8Cyclin-dependent kinase 22.7.11.220.458
2xmyCDKCyclin-dependent kinase 22.7.11.220.458
3qtxX43Cyclin-dependent kinase 22.7.11.220.456
3rkb12ZCyclin-dependent kinase 22.7.11.220.456
2b54D05Cyclin-dependent kinase 22.7.11.220.455
2uzoC62Cyclin-dependent kinase 22.7.11.220.455
3ddqRRCCyclin-dependent kinase 22.7.11.220.455
1y8yCT7Cyclin-dependent kinase 22.7.11.220.454
3le62BZCyclin-dependent kinase 22.7.11.220.454
3rak03ZCyclin-dependent kinase 22.7.11.220.454
3rk507ZCyclin-dependent kinase 22.7.11.220.454
2iw94SPCyclin-dependent kinase 22.7.11.220.453
3r9hZ67Cyclin-dependent kinase 22.7.11.220.453
3ezrEZRCyclin-dependent kinase 22.7.11.220.452
3lfsA07Cyclin-dependent kinase 22.7.11.220.452
1pxlCK4Cyclin-dependent kinase 22.7.11.220.451
4eon1ROCyclin-dependent kinase 22.7.11.220.451
4fkpLS5Cyclin-dependent kinase 22.7.11.220.451
4fkv61KCyclin-dependent kinase 22.7.11.220.451
2b53D23Cyclin-dependent kinase 22.7.11.220.450
3ig7EFPCyclin-dependent kinase 22.7.11.220.450
3qqkX02Cyclin-dependent kinase 22.7.11.220.449
3r7uX96Cyclin-dependent kinase 22.7.11.220.448
2uznC96Cyclin-dependent kinase 22.7.11.220.447
3ti1B49Cyclin-dependent kinase 22.7.11.220.447
2fvdLIACyclin-dependent kinase 22.7.11.220.446
3ezvEZVCyclin-dependent kinase 22.7.11.220.446
3unk0BYCyclin-dependent kinase 22.7.11.220.446
4fkw62KCyclin-dependent kinase 22.7.11.220.446
1di8DTQCyclin-dependent kinase 22.7.11.220.445
1unlRRCCyclin-dependent-like kinase 52.7.11.10.445
2c68CT6Cyclin-dependent kinase 22.7.11.220.445
3r9oZ71Cyclin-dependent kinase 22.7.11.220.445
4fks46KCyclin-dependent kinase 22.7.11.220.444
3r7iX9ICyclin-dependent kinase 22.7.11.220.443
3sheI85MAP kinase-activated protein kinase 32.7.11.10.443
2y9qANPMitogen-activated protein kinase 12.7.11.240.442
4gih0X5Non-receptor tyrosine-protein kinase TYK22.7.10.20.442
1b39ATPCyclin-dependent kinase 22.7.11.220.441
1oiuN76Cyclin-dependent kinase 22.7.11.220.440
1v0pPVBCell division control protein 2 homolog2.7.11.220.440
2vu3LZECyclin-dependent kinase 22.7.11.220.440
3r1yX76Cyclin-dependent kinase 22.7.11.220.440
3ral04ZCyclin-dependent kinase 22.7.11.220.440