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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.819
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.706
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.643
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.637
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.630
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.623
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.617
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.614
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.600
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.594
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.593
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.592
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.589
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.588
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.586
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.578
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.577
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.576
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.574
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.570
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.569
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.563
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.560
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.552
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.539
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.537
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.510
2fs4PZ1Renin3.4.23.150.473
1k7fIAVTryptophan synthase alpha chain/0.461
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.447
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.446
2uxoTACHTH-type transcriptional regulator TtgR/0.443
4pkl1GHUncharacterized protein/0.442
4dymIYZActivin receptor type-12.7.11.300.441