scPDB - Distribution of Binding site Similarity values of 3gag entry / Site 2

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3gag	FMN	Putative NADH dehydrogenase NAD(P)H nitroreductase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3gag	FMN	Putative NADH dehydrogenase NAD(P)H nitroreductase	/	1.000
1bws	NDP	GDP-L-fucose synthase	/	0.498
3eof	FMN	Putative oxidase	/	0.490
2rl1	UD1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	/	0.481
3qt6	2P0	Mevalonate diphosphate decarboxylase	/	0.480
1kh3	ANP	Argininosuccinate synthase	/	0.478
2lba	CHO	Fatty acid binding protein 6	/	0.476
1a5b	IGP	Tryptophan synthase alpha chain	/	0.475
1j21	ATP	Argininosuccinate synthase	/	0.469
1rfu	ADP	Pyridoxal kinase	2.7.1.35	0.469
2d29	FAD	Acyl-CoA dehydrogenase	/	0.467
3flk	NAI	Tartrate dehydrogenase/decarboxylase	1.1.1.93	0.462
3vcy	UD1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	/	0.462
3fr5	I4A	Fatty acid-binding protein, adipocyte	/	0.461
2dr3	ADP	UPF0273 protein PH0284	/	0.460
2i7p	ACO	Pantothenate kinase 3	2.7.1.33	0.459
4gl4	NAI	Alcohol dehydrogenase class-3	/	0.459
2g22	6IG	Renin	3.4.23.15	0.458
2chx	090	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.457
6gsw	GPS	Glutathione S-transferase Mu 1	2.5.1.18	0.457
3lpk	Z76	Beta-secretase 1	3.4.23.46	0.456
4gdd	NAI	UDP-galactopyranose mutase	/	0.456
1icq	FMN	12-oxophytodienoate reductase 1	1.3.1.42	0.455
2f7x	4EA	cAMP-dependent protein kinase catalytic subunit alpha	2.7.11.11	0.455
3upk	UD1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	/	0.455
1i59	ANP	Chemotaxis protein CheA	2.7.13.3	0.454
1vbi	NAD	Malate/L-lactate dehydrogenase family protein	/	0.454
3gfb	NAD	L-threonine 3-dehydrogenase	/	0.454
3otw	COA	Phosphopantetheine adenylyltransferase	/	0.454
4a8v	2AN	Major pollen allergen Bet v 1-J	/	0.454
4k6f	NAP	Putative Acetoacetyl-CoA reductase	/	0.454
2zba	ZBA	Trichothecene 3-O-acetyltransferase	/	0.453
1rne	C60	Renin	3.4.23.15	0.452
2g1n	1IG	Renin	3.4.23.15	0.452
3fhy	ATP	Pyridoxal kinase	2.7.1.35	0.452
3pxv	FMN	Nitroreductase	/	0.452
3u9e	COA	Lmo1369 protein	/	0.452
1j1z	ATP	Argininosuccinate synthase	/	0.451
2d8a	NAD	L-threonine 3-dehydrogenase	/	0.451
3swq	EPU	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	/	0.451
1x2h	LPA	Lipoate-protein ligase A	6.3.1.20	0.450
4gj3	0XP	Non-receptor tyrosine-protein kinase TYK2	2.7.10.2	0.450
4r7u	UD1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	/	0.450
4xf7	ACP	Carbohydrate/pyrimidine kinase, PfkB family	/	0.450
1npv	L27	Gag-Pol polyprotein	3.4.23.16	0.449
1xdp	ATP	Polyphosphate kinase	/	0.449
2avv	MK1	Gag-Pol polyprotein	3.4.23.16	0.449
4gdy	0X1	Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial	2.6.1.39	0.449
5f54	TMP	Single-stranded-DNA-specific exonuclease	/	0.449
1bwl	FMN	NADPH dehydrogenase 1	1.6.99.1	0.448
3enk	UPG	UDP-glucose 4-epimerase	/	0.448
3tjz	GNP	ADP-ribosylation factor 1	/	0.447
2bxf	DZP	Serum albumin	/	0.446
2hma	SAM	tRNA-specific 2-thiouridylase MnmA	/	0.446
3e8n	VRA	Dual specificity mitogen-activated protein kinase kinase 1	2.7.12.2	0.446
4eft	EFT	Heat shock protein HSP 90-alpha	/	0.446
1rj6	AZM	Carbonic anhydrase 14	4.2.1.1	0.445
1zeo	C01	Peroxisome proliferator-activated receptor gamma	/	0.445
2fk8	SAM	Hydroxymycolate synthase MmaA4	2.1.1	0.445
3cne	FMN	Putative protease I	/	0.445
3dy8	IBM	High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A	/	0.445
3jsw	JAR	High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A	/	0.445
3lqf	NAD	Galactitol dehydrogenase	/	0.445
3mpi	FAD	Glutaryl-CoA dehydrogenase	1.3.99.32	0.445
4a86	2AN	Major pollen allergen Bet v 1-A	/	0.445
4bfx	ZVX	Pantothenate kinase	2.7.1.33	0.445
4kfq	KFQ	Glutamate receptor ionotropic, NMDA 1	/	0.445
1gg5	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.444
1h50	FMN	Pentaerythritol tetranitrate reductase	/	0.444
1kbq	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.444
1q3g	UDA	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	/	0.444
1xe5	5FE	Plasmepsin-2	3.4.23.39	0.444
2qbn	CAM	Camphor 5-monooxygenase	1.14.15.1	0.444
3gwf	NAP	Cyclohexanone monooxygenase	/	0.444
3keu	ATP	Pyridoxal kinase	2.7.1.35	0.444
3peh	IBD	Endoplasmin homolog, putative	/	0.444
4a87	NAR	Major pollen allergen Bet v 1-A	/	0.444
4qfy	DCP	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	3.1.5	0.444
1h69	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.443
1n2s	NAI	dTDP-4-dehydrorhamnose reductase	1.1.1.133	0.443
2rc3	NAD	CBS domain	/	0.443
3iss	EPU	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	/	0.443
3nbv	ANP	Ketohexokinase	/	0.443
3oqf	S51	Renin	3.4.23.15	0.443
4eak	ATP	5'-AMP-activated protein kinase subunit gamma-1	/	0.443
4fhk	0U0	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.443
1ec3	MS3	Gag-Pol polyprotein	3.4.23.16	0.442
1fxs	NAP	GDP-L-fucose synthase	/	0.442
1g7v	PAI	2-dehydro-3-deoxyphosphooctonate aldolase	2.5.1.55	0.442
1jq5	NAD	Glycerol dehydrogenase	1.1.1.6	0.442
1ps9	MDE	2,4-dienoyl-CoA reductase	1.3.1.34	0.442
1uae	UD1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	/	0.442
2he5	NDP	Aldo-keto reductase family 1 member C21	1.1.1	0.442
2lfo	GCH	Fatty acid-binding protein, liver	/	0.442
2ztv	NAD	D(-)-3-hydroxybutyrate dehydrogenase	/	0.442
3slk	NDP	Polyketide synthase extender module 2	/	0.442
4bgi	I4I	Enoyl-[acyl-carrier-protein] reductase [NADH]	1.3.1.9	0.442
4xwt	U5P	Ribonuclease J	/	0.442
1ics	FMN	12-oxophytodienoate reductase 1	1.3.1.42	0.441
2qnq	QN3	Gag-Pol polyprotein	3.4.23.16	0.441
3d4p	NAD	L-lactate dehydrogenase 1	1.1.1.27	0.441
3p62	FMN	Pentaerythritol tetranitrate reductase	/	0.441
4anx	534	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.441
4df2	FMN	NADPH dehydrogenase	/	0.441
4m49	22Y	L-lactate dehydrogenase A chain	1.1.1.27	0.441
4m9a	FDA	Acyl-CoA dehydrogenase	/	0.441
1g6k	NAD	Glucose 1-dehydrogenase	1.1.1.47	0.440
1oc1	ASV	Isopenicillin N synthase	1.21.3.1	0.440
1zga	HMK	Isoflavone 4'-O-methyltransferase	/	0.440
2wzw	FMN	Nitroreductase NfnB	/	0.440
3beo	UD1	UDP-N-acetylglucosamine 2-epimerase	/	0.440
4a6c	QG9	Gag-Pol polyprotein	3.4.23.16	0.440
4en4	ATP	Pyridoxal kinase	2.7.1.35	0.440
4tlz	NAP	KtzI	/	0.440
5c41	ACP	Ribokinase	/	0.440