2.300 Å
X-ray
2010-06-04
Name: | Ketohexokinase |
---|---|
ID: | KHK_HUMAN |
AC: | P50053 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 95 % |
B | 5 % |
B-Factor: | 42.786 |
---|---|
Number of residues: | 41 |
Including | |
Standard Amino Acids: | 39 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.969 | 1363.500 |
% Hydrophobic | % Polar |
---|---|
39.11 | 60.89 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 63 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-4.47897 | 1.32406 | 18.6422 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2G | NH2 | ARG- 108 | 3.31 | 169.1 | H-Bond (Protein Donor) |
O3G | NH2 | ARG- 108 | 2.8 | 121.75 | H-Bond (Protein Donor) |
O3G | CZ | ARG- 108 | 2.9 | 0 | Ionic (Protein Cationic) |
C5' | CB | ALA- 224 | 3.86 | 0 | Hydrophobic |
C4' | CB | PHE- 260 | 3.99 | 0 | Hydrophobic |
C2' | SG | CYS- 282 | 4.48 | 0 | Hydrophobic |
C4' | CB | ALA- 285 | 4.15 | 0 | Hydrophobic |
C1' | CB | ALA- 285 | 3.64 | 0 | Hydrophobic |
O1A | O | HOH- 327 | 2.89 | 179.96 | H-Bond (Protein Donor) |