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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2blaCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2blaCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.31.000
1j3jCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.619
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.601
3qg2CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.596
3um81CYBifunctional dihydrofolate reductase-thymidylate synthase/0.589
4ixeIXEDihydrofolate reductase1.5.1.30.580
3dg8RJ6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.576
2blbCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.573
4h9506UDihydrofolate reductase1.5.1.30.573
3dgaRJ1Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.567
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.565
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.564
1hfqMOTDihydrofolate reductase1.5.1.30.562
1klkPMDDihydrofolate reductase1.5.1.30.560
1aoeGW3Dihydrofolate reductase1.5.1.30.559
3qly55VUncharacterized protein/0.557
4m6l21VDihydrofolate reductase1.5.1.30.557
1cd2FOLDihydrofolate reductase1.5.1.30.555
3qls55VDihydrofolate reductase1.5.1.30.543
3qlxQLRUncharacterized protein/0.540
3qgtCP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.536
4x5fFOLDihydrofolate reductase1.5.1.30.535
4h9614QDihydrofolate reductase1.5.1.30.534
2bl9CP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.533
3invC50Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.533
2w3aTOPDihydrofolate reductase1.5.1.30.532
1vj3TABDihydrofolate reductase1.5.1.30.531
2fzhDH1Dihydrofolate reductase1.5.1.30.531
1ia1TQ3Dihydrofolate reductase1.5.1.30.530
3um61CYBifunctional dihydrofolate reductase-thymidylate synthase/0.530
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.529
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.529
1bozPRDDihydrofolate reductase1.5.1.30.527
2blcCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.527
1m78CLZDihydrofolate reductase1.5.1.30.526
3cseN22Uncharacterized protein/0.525
4kfj1R0Dihydrofolate reductase1.5.1.30.525
1j3kWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.524
3qlrQLRDihydrofolate reductase1.5.1.30.524
3qlzQLZUncharacterized protein/0.524
2cd2FOLDihydrofolate reductase1.5.1.30.523
4kak06UDihydrofolate reductase1.5.1.30.523
4h9753SDihydrofolate reductase1.5.1.30.522
1hfpMOTDihydrofolate reductase1.5.1.30.518
1dg5TOPDihydrofolate reductase1.5.1.30.517
3l3rOAGDihydrofolate reductase1.5.1.30.516
3oafOAGDihydrofolate reductase1.5.1.30.515
3nxoD2BDihydrofolate reductase1.5.1.30.514
2w3mFOLDihydrofolate reductase1.5.1.30.512
3qlwN22Dihydrofolate reductase1.5.1.30.512
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.508
4kebFOLDihydrofolate reductase1.5.1.30.507
3eem53VUncharacterized protein/0.505
3k47D09Dihydrofolate reductase1.5.1.30.505
4dphP65Bifunctional dihydrofolate reductase-thymidylate synthase/0.505
1j3iWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.503
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.503
1e26GPBDihydrofolate reductase1.5.1.30.502
1m7aMQUDihydrofolate reductase1.5.1.30.502
3eej53RUncharacterized protein/0.502
4x5gFOLDihydrofolate reductase1.5.1.30.501
4g95OAGDihydrofolate reductase1.5.1.30.499
1rx7FOLDihydrofolate reductase1.5.1.30.498
1m79MQ1Dihydrofolate reductase1.5.1.30.497
2w3vTOPDihydrofolate reductase/0.497
4kbn25UDihydrofolate reductase1.5.1.30.497
1ia4TQ6Dihydrofolate reductase1.5.1.30.496
3nxtD2EDihydrofolate reductase1.5.1.30.496
1ddsMTXDihydrofolate reductase1.5.1.30.495
4dp3MMVBifunctional dihydrofolate reductase-thymidylate synthase/0.494
2fziDH3Dihydrofolate reductase1.5.1.30.493
3jsuKA5Bifunctional dihydrofolate reductase-thymidylate synthase/0.493
3nxrD2DDihydrofolate reductase1.5.1.30.493
4m2xTMQDihydrofolate reductase1.5.1.30.492
3nxvD2FDihydrofolate reductase1.5.1.30.491
1dhfFOLDihydrofolate reductase1.5.1.30.489
5cccDDFDihydrofolate reductase1.5.1.30.489
1ia2TQ4Dihydrofolate reductase1.5.1.30.488
1ia3TQ5Dihydrofolate reductase1.5.1.30.487
3nj0PYVAbscisic acid receptor PYL2/0.487
1dajMOTDihydrofolate reductase1.5.1.30.486
2zzaFOLDihydrofolate reductase/0.486
3eek53SUncharacterized protein/0.486
3clbTMQBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.485
3ntz3TZDihydrofolate reductase1.5.1.30.485
3eel53TUncharacterized protein/0.484
3rg9WRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.484
4h9814QUncharacterized protein/0.484
4cd2FOLDihydrofolate reductase1.5.1.30.483
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.483
1dg7WRBDihydrofolate reductase1.5.1.30.482
4kne1CYDihydrofolate reductase1.5.1.30.481
1rx3MTXDihydrofolate reductase1.5.1.30.480
4x5jFOLDihydrofolate reductase1.5.1.30.480
1szmBI4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.479
3ix9MTXDihydrofolate reductase1.5.1.30.479
1re7FOLDihydrofolate reductase1.5.1.30.476
3s3vTOPDihydrofolate reductase1.5.1.30.476
3eigMTXDihydrofolate reductase1.5.1.30.475
3sgv2BJDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.474
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.474
2xviFADPutative flavin-containing monooxygenase/0.473
3och2MXDihydrofolate reductase1.5.1.30.473
4g8zTOPDihydrofolate reductase1.5.1.30.473
4i13FOLDihydrofolate reductase1.5.1.30.473
4j6cSTRCytochrome P450 monooxygenase/0.473
4kd79DRDihydrofolate reductase1.5.1.30.473
1fmjRTLRetinol dehydratase/0.472
2vcmM11Isopenicillin N synthase1.21.3.10.472
2zbaZBATrichothecene 3-O-acetyltransferase/0.472
3nxyD2HDihydrofolate reductase1.5.1.30.472
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.472
4cdmFO1Deoxyribodipyrimidine photolyase/0.472
1rd7FOLDihydrofolate reductase1.5.1.30.471
3tq9MTXDihydrofolate reductase/0.471
4bb3KKAIsopenicillin N synthase1.21.3.10.471
4ixgIXGDihydrofolate reductase1.5.1.30.471
4p68MTXDihydrofolate reductase/0.471
1ao8MTXDihydrofolate reductase1.5.1.30.470
1ohjCOPDihydrofolate reductase1.5.1.30.470
3cd2MTXDihydrofolate reductase1.5.1.30.470
4e0u0MVCyclic dipeptide N-prenyltransferase/0.469
3ghvGHCDihydrofolate reductase1.5.1.30.468
1rc4DDFDihydrofolate reductase1.5.1.30.467
1rf7DHFDihydrofolate reductase1.5.1.30.466
3cv9VDXVitamin D3 dihydroxylase/0.466
1ra2FOLDihydrofolate reductase1.5.1.30.465
2ktdPUCProstaglandin-H2 D-isomerase5.3.99.20.465
3ghwGHWDihydrofolate reductase1.5.1.30.465
1hfrMOTDihydrofolate reductase1.5.1.30.464
1pd9CO4Dihydrofolate reductase1.5.1.30.464
2iviACWIsopenicillin N synthase1.21.3.10.464
3sai9DRDihydrofolate reductase/0.464
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.464
4x5hFOLDihydrofolate reductase1.5.1.30.464
1mvsDTMDihydrofolate reductase1.5.1.30.463
1tdrMTXDihydrofolate reductase1.5.1.30.462
3n0hTOPDihydrofolate reductase1.5.1.30.462
3sgy06WDihydrofolate reductase1.5.1.30.462
1sd2MTHS-methyl-5'-thioadenosine phosphorylase/0.461
3gi2GHWDihydrofolate reductase1.5.1.30.460
3sh25DRDihydrofolate reductase1.5.1.30.460
3td8D2RDihydrofolate reductase1.5.1.30.460
4nx7FOLDihydrofolate reductase1.5.1.30.460
7dfrFOLDihydrofolate reductase1.5.1.30.460
1rb3MTXDihydrofolate reductase1.5.1.30.459
1s3yTQTDihydrofolate reductase1.5.1.30.459
3ns2PYVAbscisic acid receptor PYL2/0.459
4gyzD5MTyrosyl-DNA phosphodiesterase 23.1.40.459
4x5iFOLDihydrofolate reductase1.5.1.30.459
1dr3HBIDihydrofolate reductase1.5.1.30.458
1s3uTQDDihydrofolate reductase1.5.1.30.458
2p15EZTEstrogen receptor/0.458
2vn0TDZCytochrome P450 2C8/0.458
3ia4MTXDihydrofolate reductase/0.458
3r336MEDihydrofolate reductase1.5.1.30.458
4ips1G4Mycocyclosin synthase1.14.21.90.458
1qiqACCIsopenicillin N synthase1.21.3.10.457
3h3sH15Collagen type IV alpha-3-binding protein/0.457
1s3vTQDDihydrofolate reductase1.5.1.30.456
2wo7ASVIsopenicillin N synthase1.21.3.10.456
3gyf51PDihydrofolate reductase1.5.1.30.456
3sa27DRDihydrofolate reductase/0.456
3zoiM2WIsopenicillin N synthase1.21.3.10.456
4fgg0U5Dihydrofolate reductase1.5.1.30.456
1bk0ACVIsopenicillin N synthase1.21.3.10.455
2hrcCHDFerrochelatase, mitochondrial4.99.1.10.455
3mdmFJZCholesterol 24-hydroxylase/0.455
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.455
1kmsLIHDihydrofolate reductase1.5.1.30.454
2dhfDZFDihydrofolate reductase1.5.1.30.454
3dfrMTXDihydrofolate reductase1.5.1.30.454
3lfcZ86Mitogen-activated protein kinase 14/0.454
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.454
4nx6FOLDihydrofolate reductase1.5.1.30.454
1dyiFOLDihydrofolate reductase1.5.1.30.453
2jedLG8Protein kinase C theta type2.7.11.130.453
2y6fM9FIsopenicillin N synthase1.21.3.10.453
3h3r14HCollagen type IV alpha-3-binding protein/0.453
3tqbFOLDihydrofolate reductase/0.453
3w6hAZMCarbonic anhydrase 14.2.1.10.453
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.453
4fhbFOLDihydrofolate reductase1.5.1.30.453
4p66MTXDihydrofolate reductase/0.453
1ddrMTXDihydrofolate reductase1.5.1.30.452
1dyrTOPDihydrofolate reductase1.5.1.30.452
1pkfEPDEpothilone C/D epoxidase1.140.452
1tw4CHDFatty acid-binding protein, liver/0.452
3kpzZNEVitamin D3 receptor/0.452
3sn7540cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.452
1df7MTXDihydrofolate reductase1.5.1.30.451
1hb3SCVIsopenicillin N synthase1.21.3.10.451
1qjfACSIsopenicillin N synthase1.21.3.10.451
2chw039Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.451
2jb4A14Isopenicillin N synthase1.21.3.10.451
2jn3JN3Fatty acid-binding protein, liver/0.451
3zkyWT4Isopenicillin N synthase1.21.3.10.451
4enhFVXCholesterol 24-hydroxylase/0.451
1dhjMTXDihydrofolate reductase1.5.1.30.450
1dz6CAMCamphor 5-monooxygenase1.14.15.10.450
1oc1ASVIsopenicillin N synthase1.21.3.10.450
1vzdCB3Thymidylate synthase/0.450
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.450
2w0bCMWLanosterol 14-alpha demethylase1.14.13.700.450
3l8sBFFMitogen-activated protein kinase 14/0.450
4i1nFOLDihydrofolate reductase1.5.1.30.450
1obnASVIsopenicillin N synthase1.21.3.10.449
1rx5DDFDihydrofolate reductase1.5.1.30.449
1s3wTQTDihydrofolate reductase1.5.1.30.449
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.449
2uxoTACHTH-type transcriptional regulator TtgR/0.449
2x7hPFNProstaglandin reductase 310.449
2y60M8FIsopenicillin N synthase1.21.3.10.449
4bmpFMNProtein NrdI/0.449
4ipw1G7Mycocyclosin synthase1.14.21.90.449
4l4cCAMCamphor 5-monooxygenase1.14.15.10.449
4lwaQ13Nitric oxide synthase oxygenase1.14.13.1650.449
4qq3XMPInosine-5'-monophosphate dehydrogenase/0.449
1nquRDL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.448
1og5SWFCytochrome P450 2C9/0.448
5hi6MTXDihydrofolate reductase/0.448
1draMTXDihydrofolate reductase1.5.1.30.447
1dreMTXDihydrofolate reductase1.5.1.30.447
1hb1OCVIsopenicillin N synthase1.21.3.10.447
1p0pBCHCholinesterase3.1.1.80.447
1r00SAHAclacinomycin 10-hydroxylase RdmB4.1.10.447
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.447
2a1nCAMCamphor 5-monooxygenase1.14.15.10.447
2drcMTXDihydrofolate reductase1.5.1.30.447
2po7CHDFerrochelatase, mitochondrial4.99.1.10.447
3antS82Bifunctional epoxide hydrolase 23.3.2.100.447
4j6bPLOCytochrome P450 monooxygenase/0.447
1drbMTXDihydrofolate reductase1.5.1.30.446
1g6kNADGlucose 1-dehydrogenase1.1.1.470.446
1qzfFOLBifunctional dihydrofolate reductase-thymidylate synthase/0.446
1ysx4EBSerum albumin/0.446
2qblCAMCamphor 5-monooxygenase1.14.15.10.446
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.446
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.446
4ddrMMVDihydrofolate reductase1.5.1.30.446
4ej1FOLDihydrofolate reductase1.5.1.30.446
4jlj1NMDeoxycytidine kinase2.7.1.740.446
5hs1VORLanosterol 14-alpha demethylase/0.446
1m17AQ4Epidermal growth factor receptor2.7.10.10.445
1p44NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
1rx6DDFDihydrofolate reductase1.5.1.30.445
1xorZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
2f6rACOBifunctional coenzyme A synthase/0.445
2hw2RFPRifampin ADP-ribosyl transferase/0.445
2vrbNAPTriphenylmethane reductase/0.445
3ql3FOLDihydrofolate reductase1.5.1.30.445
4jbtASDCytochrome P450 monooxygenase/0.445
1al8DHPPeroxisomal (S)-2-hydroxy-acid oxidase1.1.3.150.444
1blzACVIsopenicillin N synthase1.21.3.10.444
2vbpVB1Isopenicillin N synthase1.21.3.10.444
4ixfIXFDihydrofolate reductase1.5.1.30.444
4j6dTESCytochrome P450 monooxygenase/0.444
1f5fDHTSex hormone-binding globulin/0.443
1kmvLIIDihydrofolate reductase1.5.1.30.443
1ro98BRcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.443
2feuCAMCamphor 5-monooxygenase1.14.15.10.443
3csdEMOPutative ketoacyl reductase1.3.10.443
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
3drcMTXDihydrofolate reductase1.5.1.30.443
3nmpPYVAbscisic acid receptor PYL2/0.443
4eufNADTrans-2-enoyl-CoA reductase [NADH]/0.443
4xe606UDihydrofolate reductase1.5.1.30.443
1xddAAYIntegrin alpha-L/0.442
1yinCM3Estrogen receptor/0.442
2bu9HFVIsopenicillin N synthase1.21.3.10.442
2qd3CHDFerrochelatase, mitochondrial4.99.1.10.442
2rqfJH3Hemolymph juvenile hormone binding protein/0.442
3fwjCAMCamphor 5-monooxygenase1.14.15.10.442
3mdvCL6Cholesterol 24-hydroxylase/0.442
3tdaPN0Cytochrome P450 2D6/0.442
4mv1ADPBiotin carboxylase6.3.4.140.442
1dr4HBIDihydrofolate reductase1.5.1.30.441
3fr28CAFatty acid-binding protein, adipocyte/0.441
3kb0A8SAbscisic acid receptor PYL2/0.441
3nksACJProtoporphyrinogen oxidase1.3.3.40.441
3p3zP3ZPutative cytochrome P450/0.441
3qm4PN0Cytochrome P450 2D6/0.441
4azmT4BFatty acid-binding protein, epidermal/0.441
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.441
4ktl1CQCytochrome P450/0.441
4xoqF42Coenzyme F420:L-glutamate ligase/0.441
5akk1P8Bifunctional epoxide hydrolase 23.1.3.760.441
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
2rhrEMOPutative ketoacyl reductase1.3.10.440
2uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.440
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
3hk1B64Fatty acid-binding protein, adipocyte/0.440
3zkuHCVIsopenicillin N synthase1.21.3.10.440
4a81DXCMajor pollen allergen Bet v 1-A/0.440
5dc5B3NHistone deacetylase 83.5.1.980.440