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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5koi NAD Enoyl-[acyl-carrier-protein] reductase [NADH]

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 1.233
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 1.089
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 1.022
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 1.010
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.943
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.940
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.921
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.913
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.900
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.891
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.881
1vrw NAIEnoyl-ACP reductase / 0.876
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.876
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.872
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.862
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.861
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.857
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.852
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.851
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.851
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.846
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.836
4o1m NADEnoyl-acyl carrier reductase / 0.821
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.819
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.814
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.813
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.805
3r3s NADPutative oxidoreductase / 0.804
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.800
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.797
3s55 NADPutative short-chain dehydrogenase/reductase / 0.782
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.781
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.779
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.776
5jyd NADShort chain dehydrogenase / 0.774
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.768
2jah NDPClavaldehyde dehydrogenase / 0.765
3p19 NDPPutative blue fluorescent protein / 0.762
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.760
4bmv NAPShort-chain dehydrogenase / 0.758
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.758
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.756
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.756
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.752
3sju NDPKeto reductase / 0.747
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.746
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.744
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.743
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.741
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.739
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.739
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.738
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.737
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.736
3wds NADNADH-dependent quinuclidinone reductase / 0.735
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.731
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.729
4hwk NAPSepiapterin reductase 1.1.1.153 0.727
4b79 NADProbable short-chain dehydrogenase / 0.726
4wec NADShort chain dehydrogenase / 0.718
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.717
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.715
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.714
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.714
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.713
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.713
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.712
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.712
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.711
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.710
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.710
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.708
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.707
4kwh NAPReductase homolog / 0.707
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.706
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.705
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.704
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.704
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.703
2nq8 ZIDEnoyl-ACP reductase / 0.701
3ak4 NADNADH-dependent quinuclidinone reductase / 0.701
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.700
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.700
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.697
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.697
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.696
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.694
3icp NADNAD-dependent epimerase/dehydratase / 0.694
3o26 NDPSalutaridine reductase / 0.694
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.693
3tsc NADUncharacterized protein / 0.693
2p5y NADUDP-glucose 4-epimerase / 0.691
2wsb NADGalactitol dehydrogenase / 0.688
5jla NADPutative short-chain dehydrogenase/reductase / 0.688
1v35 NAIEnoyl-ACP reductase / 0.687
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.686
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.686
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.686
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.684
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.684
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.684
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.684
2yut NAPPutative short-chain oxidoreductase / 0.683
1ae1 NAPTropinone reductase 1 / 0.681
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.680
4dbz NDPPutative ketoacyl reductase 1.3.1 0.680
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.679
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.679
4j7u NAPSepiapterin reductase 1.1.1.153 0.679
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.678
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.678
4qec NAPElxO / 0.678
1ek5 NADUDP-glucose 4-epimerase / 0.676
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.676
3sx2 NADUncharacterized protein / 0.675
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.674
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.674
4yai NAIC alpha-dehydrogenase / 0.674
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.673
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.671
1zid ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.671
4yag NAIC alpha-dehydrogenase / 0.671
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.670
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.670
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.669
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.667
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.666
3qrw NDPPutative ketoacyl reductase 1.3.1 0.666
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.665
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.665
4qxm NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.665
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.664
1sny NAPLD36273p / 0.663
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.663
4qed NAPElxO / 0.663
2bd0 NAPSepiapterin reductase / 0.662
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.662
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.661
2c29 NAPDihydroflavonol 4-reductase / 0.661
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.661
3f1k NAPUncharacterized oxidoreductase YciK 1 0.659
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.658
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.658
2wdz NADGalactitol dehydrogenase / 0.656
1zem NADXylitol dehydrogenase / 0.655
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.652
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.652
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.650