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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qqf X07 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qqf X07Cyclin-dependent kinase 2 2.7.11.22 0.838
3rm7 19ZCyclin-dependent kinase 2 2.7.11.22 0.822
3rpo 24ZCyclin-dependent kinase 2 2.7.11.22 0.814
3qxo X65Cyclin-dependent kinase 2 2.7.11.22 0.812
3r7e X88Cyclin-dependent kinase 2 2.7.11.22 0.812
3r1y X76Cyclin-dependent kinase 2 2.7.11.22 0.809
3r1s X73Cyclin-dependent kinase 2 2.7.11.22 0.800
3qzh X69Cyclin-dependent kinase 2 2.7.11.22 0.799
3r73 X87Cyclin-dependent kinase 2 2.7.11.22 0.790
3roy 22ZCyclin-dependent kinase 2 2.7.11.22 0.790
3r7u X96Cyclin-dependent kinase 2 2.7.11.22 0.789
3r6x X84Cyclin-dependent kinase 2 2.7.11.22 0.786
3r7y Z04Cyclin-dependent kinase 2 2.7.11.22 0.786
3r7i X9ICyclin-dependent kinase 2 2.7.11.22 0.777
3rm6 18ZCyclin-dependent kinase 2 2.7.11.22 0.769
3qzi X72Cyclin-dependent kinase 2 2.7.11.22 0.768
3qwj X6ACyclin-dependent kinase 2 2.7.11.22 0.766
3r83 Z14Cyclin-dependent kinase 2 2.7.11.22 0.764
3qwk X62Cyclin-dependent kinase 2 2.7.11.22 0.761
3r1q X75Cyclin-dependent kinase 2 2.7.11.22 0.759
3r7v Z02Cyclin-dependent kinase 2 2.7.11.22 0.757
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3rai X85Cyclin-dependent kinase 2 2.7.11.22 0.735
3qx2 X63Cyclin-dependent kinase 2 2.7.11.22 0.719
3r71 X86Cyclin-dependent kinase 2 2.7.11.22 0.714
3r28 XA0Cyclin-dependent kinase 2 2.7.11.22 0.686
3qx4 X4BCyclin-dependent kinase 2 2.7.11.22 0.672
3rvg 17PTyrosine-protein kinase JAK2 / 0.670
4e5f 0N7Polymerase acidic protein / 0.660
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.657