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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2reh FAD Nitroalkane oxidase 1.7.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2reh FADNitroalkane oxidase 1.7.3.1 1.695
3fcj FADNitroalkane oxidase 1.7.3.1 1.564
2zaf FADNitroalkane oxidase 1.7.3.1 1.378
2c12 FADNitroalkane oxidase 1.7.3.1 1.286
3mkh FADNitroalkane oxidase / 1.286
2fon FADAcyl-coenzyme A oxidase / 0.734
2eba FADPutative glutaryl-CoA dehydrogenase / 0.732
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.726
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.718
2dvl FADAcyl-CoA dehydrogenase / 0.716
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.714
2yg4 FADPutrescine oxidase / 0.707
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.704
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.697
5jsc FADPutative acyl-CoA dehydrogenase / 0.696
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.691
5ahs FADAcyl-CoA dehydrogenase / 0.691
5j60 FADThioredoxin reductase / 0.690
3pl8 FADPyranose 2-oxidase / 0.689
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.688
3axb FADPutative oxidoreductase / 0.684
3oib FDAPutative acyl-CoA dehydrogenase / 0.684
2z1q FADAcyl-CoA dehydrogenase / 0.683
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.682
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.682
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.682
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.680
3bi5 FADPolyamine oxidase FMS1 / 0.677
1z48 FMNNADPH dehydrogenase / 0.676
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.676
1knp FADL-aspartate oxidase 1.4.3.16 0.675
2fja FADAdenylylsulfate reductase, subunit A (AprA) / 0.675
3qe2 FMNNADPH--cytochrome P450 reductase / 0.674
4m9a FDAAcyl-CoA dehydrogenase / 0.674
3owa FADAcyl-CoA dehydrogenase / 0.673
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.672
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.672
3qvr FADGlucose oxidase 1.1.3.4 0.672
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.672
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.670
3in6 FMNUncharacterized protein / 0.668
4eet FMNPhototropin-2 2.7.11.1 0.667
4utk FNRXenobiotic reductase / 0.666
3qfr FMNNADPH--cytochrome P450 reductase / 0.665
4fwe FADLysine-specific histone demethylase 1B 1 0.665
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.662
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.662
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.661
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.661
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.661
1c0k FADD-amino-acid oxidase 1.4.3.3 0.660
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.660
3urh FADDihydrolipoyl dehydrogenase / 0.660
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.658
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.658
1v59 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.657
3hji FADVivid PAS protein VVD / 0.656
3l5l FMNXenobiotic reductase / 0.655
3qvp FADGlucose oxidase 1.1.3.4 0.655
4cnj FADL-amino acid oxidase / 0.655
4o5q FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.655
1vhn FMNtRNA-dihydrouridine synthase / 0.654
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.654
3v76 FDAUncharacterized protein / 0.654
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.653
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.653
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.652
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.652
1knr FADL-aspartate oxidase 1.4.3.16 0.652
2yqu FADDihydrolipoyl dehydrogenase / 0.652
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.652
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.652
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651
1xpq FADPolyamine oxidase FMS1 / 0.651
2rab FADGlutathione amide reductase / 0.651
4rsl FADFructosyl peptide oxidase / 0.651
1lpf FADDihydrolipoyl dehydrogenase 1.8.1.4 0.650
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.650
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650