scPDB - 2ix5 entry

Protein Data Bank Entry:

PDB ID : 2ix5

Resolution :2.700 Å

Experimental Method : X-ray

Deposition Date : 2006-07-07

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Acyl-coenzyme A oxidase 4, peroxisomal
ID:	ACOX4_ARATH
AC:	Q96329
Organism:	Arabidopsis thaliana
Reign:	Eukaryota
TaxID:	3702
EC Number:	1.3.3.6

Chains:

Chain Name:	Percentage of Residues within binding site
A	62 %
B	36 %
D	2 %

Ligand binding site composition:

B-Factor:	36.169
Number of residues:	64
Including
Standard Amino Acids:	63
Non Standard Amino Acids:	1
Water Molecules:	0
Cofactors:	CAA
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.334	702.000

% Hydrophobic	% Polar
57.21	42.79
According to VolSite

Ligand :

HET Code:	FAD
Formula:	C27H31N9O15P2
Molecular weight:	783.534 g/mol
DrugBank ID:	DB03147
Buried Surface Area:	78.04 %
Polar Surface area:	381.7 Å2

Number of
H-Bond Acceptors:	22
H-Bond Donors:	7
Rings:	6
Aromatic rings:	3
Anionic atoms:	2
Cationic atoms:	0
Rule of Five Violation:	3
Rotatable Bonds:	13

Mass center Coordinates

X	Y	Z
36.4849	-7.5953	1.48504

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
N3	O	TRP- 172	3.25	153.46	H-Bond (Ligand Donor)	false
O2	N	LEU- 174	3.41	145.73	H-Bond (Protein Donor)	false
N1	OG1	THR- 175	2.79	159.47	H-Bond (Protein Donor)	false
O2	OG1	THR- 175	2.92	123.23	H-Bond (Protein Donor)	false
O2	N	THR- 175	2.97	169.35	H-Bond (Protein Donor)	false
C1'	CG2	THR- 175	3.83	0	Hydrophobic	false
C3'	CG2	THR- 175	4.41	0	Hydrophobic	false
O2A	N	SER- 181	3.1	132.98	H-Bond (Protein Donor)	false
C8M	CZ3	TRP- 205	4.03	0	Hydrophobic	false
C1'	CB	TRP- 205	3.53	0	Hydrophobic	false
C9A	CB	TRP- 205	3.42	0	Hydrophobic	false
O4	N	GLY- 207	3.31	167.88	H-Bond (Protein Donor)	false
C7M	CD1	LEU- 250	3.85	0	Hydrophobic	false
O1A	NE	ARG- 313	2.64	168.16	H-Bond (Protein Donor)	false
O2P	NH2	ARG- 313	3.07	142.13	H-Bond (Protein Donor)	false
O1A	CZ	ARG- 313	3.56	0	Ionic (Protein Cationic)	false
C1B	CD2	LEU- 320	4.29	0	Hydrophobic	false
C5B	CD1	LEU- 320	3.66	0	Hydrophobic	false
O4B	ND2	ASN- 326	3.27	159.57	H-Bond (Protein Donor)	false
O3B	O	GLU- 381	2.54	166.08	H-Bond (Ligand Donor)	false
O1P	N	GLY- 385	2.82	149.7	H-Bond (Protein Donor)	false
C7M	CD1	ILE- 388	4.07	0	Hydrophobic	false
C8M	CD1	ILE- 388	3.84	0	Hydrophobic	false
C8M	CB	PRO- 403	4.15	0	Hydrophobic	false
C7M	CB	PRO- 403	3.46	0	Hydrophobic	false
C4'	CG2	THR- 406	4.39	0	Hydrophobic	false
C7M	CD2	TYR- 407	4.15	0	Hydrophobic	false
C2'	CB	TYR- 407	3.71	0	Hydrophobic	false
C6	CD2	TYR- 407	3.43	0	Hydrophobic	false
C9A	CB	TYR- 407	3.84	0	Hydrophobic	false
O2B	OG1	THR- 410	2.85	156.99	H-Bond (Protein Donor)	false
C2B	CG2	THR- 410	3.82	0	Hydrophobic	false
N6A	O	PHE- 428	2.8	152.42	H-Bond (Ligand Donor)	false