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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ix5 FAD Acyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 1.367
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.996
2eba FADPutative glutaryl-CoA dehydrogenase / 0.977
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.939
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.925
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.925
5jsc FADPutative acyl-CoA dehydrogenase / 0.881
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.880
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.880
2pg0 FADAcyl-CoA dehydrogenase / 0.864
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.856
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.845
4m9a FDAAcyl-CoA dehydrogenase / 0.842
2dvl FADAcyl-CoA dehydrogenase / 0.841
3oib FDAPutative acyl-CoA dehydrogenase / 0.834
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.833
3owa FADAcyl-CoA dehydrogenase / 0.833
2d29 FADAcyl-CoA dehydrogenase / 0.827
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.822
3p4t FAOPutative acyl-CoA dehydrogenase / 0.821
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.793
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.791
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.791
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.785
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.784
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.778
3r7k FDAProbable acyl CoA dehydrogenase / 0.774
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.773
2fon FADAcyl-coenzyme A oxidase / 0.769
5af7 FADAcyl-CoA dehydrogenase / 0.769
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.758
1r2j FADFkbI / 0.745
2z1q FADAcyl-CoA dehydrogenase / 0.745
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.732
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.731
5ahs FADAcyl-CoA dehydrogenase / 0.724
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.717
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.709
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.684
2yyl FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.680
4bmo FMNProtein NrdI / 0.678
3w8w FADPutative FAD-dependent oxygenase EncM / 0.676
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.675
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.668
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.664
2v18 FMNDodecin / 0.663
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.662
2reh FADNitroalkane oxidase 1.7.3.1 0.662
4qly FMNEnone reductase CLA-ER / 0.661
5tgz FMNCannabinoid receptor 1 / 0.659
3n39 FMNProtein NrdI / 0.657
4ttc FMNIodotyrosine deiodinase 1 / 0.657
4xbf FADLysine-specific histone demethylase 1A 1 0.657
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.656
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.656
2pr5 FMNBlue-light photoreceptor / 0.653
4irn FADAnaB / 0.653
2wzv FMNNitroreductase NfnB / 0.652