Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ix5FADAcyl-coenzyme A oxidase 4, peroxisomal1.3.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ix5FADAcyl-coenzyme A oxidase 4, peroxisomal1.3.3.61.000
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.542
1t9gFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.540
3owaFADAcyl-CoA dehydrogenase/0.518
1jqiFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial/0.515
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.513
2ebaFADPutative glutaryl-CoA dehydrogenase/0.509
3nf4FADAcyl-CoA dehydrogenase domain-containing protein/0.506
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.502
3pfdFDAAcyl-CoA dehydrogenase FadE25/0.502
2z1qFADAcyl-CoA dehydrogenase/0.501
2fonFADAcyl-coenzyme A oxidase/0.488
4irnFADAnaB/0.482
5jscFADPutative acyl-CoA dehydrogenase/0.481
5ahsFADAcyl-CoA dehydrogenase/0.472
3u33FADPutative acyl-CoA dehydrogenase AidB1.3.990.469
3mddFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.466
4x28FDAAcyl-CoA dehydrogenase FadE26/0.457
4x28FDAAcyl-CoA dehydrogenase FadE27/0.457
4iv6FDAIsovaleryl-CoA dehydrogenase/0.452
3mpjFADGlutaryl-CoA dehydrogenase1.3.99.320.447
3r7kFDAProbable acyl CoA dehydrogenase/0.445
3p4tFAOPutative acyl-CoA dehydrogenase/0.441