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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y4s ADP Chaperone protein HtpG

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1y4s ADPChaperone protein HtpG / 0.856
2ior ADPChaperone protein HtpG / 0.741
1yt0 ADPEndoplasmin / 0.727
5f5r ANPHeat shock protein 75 kDa, mitochondrial / 0.716
2o1u ANPEndoplasmin / 0.715
4ivg ANPTNF receptor-associated protein 1 / 0.715
4xcj ADPHeat shock cognate 90 kDa protein / 0.708
2xcm ADPCytosolic heat shock protein 90 / 0.705
3t2s AGSHeat shock protein HSP 90-alpha / 0.705
4xc0 ACPHeat shock cognate 90 kDa protein / 0.703
2xk2 ADPHeat shock protein HSP 90-alpha / 0.702
3t10 ACPHeat shock protein HSP 90-alpha / 0.701
4ipe ANPTNF receptor-associated protein 1 / 0.701
1byq ADPHeat shock protein HSP 90-alpha / 0.699
2o1v ADPEndoplasmin / 0.699
4xcl AGSHeat shock cognate 90 kDa protein / 0.690
4gqt ADPHeat shock protein 90 / 0.689
3t1k ANPHeat shock protein HSP 90-alpha / 0.688
3ehj ACPSensor histidine kinase DesK 2.7.13.3 0.684
2yeg XQGHeat shock protein HSP 90-alpha / 0.676
2yef ANPHeat shock protein HSP 90-alpha / 0.674
3ied AN2HSP90 / 0.671
2zkj ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.668
3t0z ATPHeat shock protein HSP 90-alpha / 0.664
3d2r ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.663
1amw ADPATP-dependent molecular chaperone HSP82 / 0.661
1z5a ADPType 2 DNA topoisomerase 6 subunit B / 0.661
2wep ADPATP-dependent molecular chaperone HSP82 / 0.659
1i59 ANPChemotaxis protein CheA 2.7.13.3 0.658
2bu8 ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.651
1am1 ADPATP-dependent molecular chaperone HSP82 / 0.650
2yee 2ECHeat shock protein HSP 90-alpha / 0.650
3crl ANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.650