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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xse NDP Corticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 1.462
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 1.070
1oaa NAPSepiapterin reductase 1.1.1.153 0.991
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.981
4hwk NAPSepiapterin reductase 1.1.1.153 0.954
4j7x NAPSepiapterin reductase 1.1.1.153 0.943
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.929
4dbz NDPPutative ketoacyl reductase 1.3.1 0.926
4j7u NAPSepiapterin reductase 1.1.1.153 0.916
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.913
1ae1 NAPTropinone reductase 1 / 0.896
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.890
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.879
1x7h NDPPutative ketoacyl reductase 1.3.1 0.878
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.876
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.872
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.870
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.867
4bmv NAPShort-chain dehydrogenase / 0.865
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.855
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.848
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.844
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.841
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.828
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.826
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.822
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.820
3ai2 NDPNADPH-sorbose reductase / 0.820
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.817
4kwh NAPReductase homolog / 0.817
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.815
1pr9 NAPL-xylulose reductase 1.1.1.10 0.812
3qrw NDPPutative ketoacyl reductase 1.3.1 0.811
2wdz NADGalactitol dehydrogenase / 0.810
3uce NDPDehydrogenase / 0.809
3o26 NDPSalutaridine reductase / 0.807
3d3w NAPL-xylulose reductase 1.1.1.10 0.801
1x7g NAPPutative ketoacyl reductase 1.3.1 0.799
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.797
2dte NAIGlucose 1-dehydrogenase related protein / 0.794
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.792
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.791
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.787
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.784
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.784
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.784
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.783
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.783
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.782
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.781
3p19 NDPPutative blue fluorescent protein / 0.778
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.772
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.772
3geg NADShort-chain dehydrogenase/reductase SDR / 0.772
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.771
3l77 NJPShort-chain alcohol dehydrogenase / 0.770
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.767
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.767
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.767
1sny NAPLD36273p / 0.766
3wds NADNADH-dependent quinuclidinone reductase / 0.765
1xkq NDPUncharacterized protein / 0.763
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.763
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.762
2c29 NAPDihydroflavonol 4-reductase / 0.762
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.758
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.758
3ak4 NADNADH-dependent quinuclidinone reductase / 0.758
3ai3 NDPNADPH-sorbose reductase / 0.756
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.756
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.755
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.753
5lc1 NADL-threonine 3-dehydrogenase / 0.753
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.752
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.751
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.750
4wec NADShort chain dehydrogenase / 0.750
4fn4 NADShort chain dehydrogenase / 0.749
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.748
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.748
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.747
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.747
5jyd NADShort chain dehydrogenase / 0.747
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.746
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.745
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.743
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.743
2jah NDPClavaldehyde dehydrogenase / 0.742
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.741
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.741
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.741
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.741
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.741
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.740
2yy7 NADL-threonine dehydrogenase / 0.739
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.739
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.739
3tn7 NJPShort-chain alcohol dehydrogenase / 0.736
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.736
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.736
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.734
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.733
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.733
1g1a NADdTDP-glucose 4,6-dehydratase / 0.732
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.732
3wmx NADNAD dependent epimerase/dehydratase / 0.730
4eso NAPPutative oxidoreductase / 0.730
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.729
4b79 NADProbable short-chain dehydrogenase / 0.729
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.728
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.728
3s55 NADPutative short-chain dehydrogenase/reductase / 0.727
1ipe NDPTropinone reductase 2 1.1.1.236 0.726
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.726
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.723
1w4z NAPPutative ketoacyl reductase 1.3.1 0.722
1zem NADXylitol dehydrogenase / 0.722
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.722
2bd0 NAPSepiapterin reductase / 0.719
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.717
2wsb NADGalactitol dehydrogenase / 0.716
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.712
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.712
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.712
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.712
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.711
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.710
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.710
3r3s NADPutative oxidoreductase / 0.710
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.710
4u7w NDPMxaA / 0.710
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.709
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.709
2p5y NADUDP-glucose 4-epimerase / 0.708
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.707
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.707
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.707
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.707
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.706
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.706
4hxy NDPPlm1 / 0.706
3a9w NADNDP-sugar epimerase / 0.704
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.703
3aw9 NADNAD-dependent epimerase/dehydratase / 0.702
4qed NAPElxO / 0.702
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.701
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.700
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.699
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.699
4b4o NDPEpimerase family protein SDR39U1 / 0.698
1e7y NDPGlucose-6-phosphate 1-dehydrogenase / 0.697
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.697
1rpn NDPGDP-mannose 4,6-dehydratase / 0.696
3sx2 NADUncharacterized protein / 0.695
5ein NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.695
3h2s NDPPutative NADH-flavin reductase / 0.693
5jla NADPutative short-chain dehydrogenase/reductase / 0.693
1sby NADAlcohol dehydrogenase 1.1.1.1 0.692
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.692
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.692
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.690
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.688
3ko8 NADNAD-dependent epimerase/dehydratase / 0.686
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.686
5d2e NAPMlnE / 0.686
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.685
3bmo NAPPteridine reductase / 0.685
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.684
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.684
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.684
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.684
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.684
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.683
3icp NADNAD-dependent epimerase/dehydratase / 0.682
4qec NAPElxO / 0.682
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.681
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.680
3f1k NAPUncharacterized oxidoreductase YciK 1 0.679
1j5p NADL-aspartate dehydrogenase 1.4.1.21 0.678
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.678
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.678
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.677
2yut NAPPutative short-chain oxidoreductase / 0.676
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.675
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.675
3a4v NADNDP-sugar epimerase / 0.674
1wnt NAPL-xylulose reductase 1.1.1.10 0.673
4yai NAIC alpha-dehydrogenase / 0.673
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.672
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.672
3tsc NADUncharacterized protein / 0.672
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.672
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.672
1axg NADAlcohol dehydrogenase E chain 1.1.1.1 0.670
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.670
3mje NDPAmphB / 0.670
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.669
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.668
4clo NAPPteridine reductase / 0.668
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.667
1evj NADGlucose--fructose oxidoreductase 1.1.99.28 0.666
3zhb NAPPutative dehydrogenase / 0.666
1i3l NADUDP-glucose 4-epimerase / 0.665
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.665
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.664
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.664
1ek5 NADUDP-glucose 4-epimerase / 0.663
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.663
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
4imp NDPPolyketide synthase extender modules 3-4 / 0.663
4o1m NADEnoyl-acyl carrier reductase / 0.662
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.661
2i3g NAPN-acetyl-gamma-glutamyl-phosphate reductase 1.2.1.38 0.661
2p9e NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.661
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.660
1u28 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.660
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.660
3sju NDPKeto reductase / 0.660
1iy8 NADLevodione reductase / 0.659
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.659
2rcy NAPPyrroline-5-carboxylate reductase / 0.659
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.659
4b7x NAPProbable oxidoreductase / 0.659
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.658
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.657
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.654
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.654
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.654
4oqy NDP(S)-imine reductase / 0.654
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.654
5a04 NDPGlucose-fructose oxidoreductase / 0.654
1enp NADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.653
3h4v NAPPteridine reductase 1 1.5.1.33 0.653
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.653
2z1m NDPGDP-mannose 4,6-dehydratase / 0.652
2q46 NAPUncharacterized protein At5g02240 / 0.651
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.650
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.650
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.650
3tox NAPPutative oxidoreductase / 0.650