sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1pk9 | 2FA | Purine nucleoside phosphorylase DeoD-type |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1pk9 | 2FA | Purine nucleoside phosphorylase DeoD-type | / | 0.905 | |
| 1pr0 | NOS | Purine nucleoside phosphorylase DeoD-type | / | 0.800 | |
| 3uaz | NOS | Purine nucleoside phosphorylase DeoD-type | / | 0.794 | |
| 1pke | 2FD | Purine nucleoside phosphorylase DeoD-type | / | 0.778 | |
| 1pr6 | XYA | Purine nucleoside phosphorylase DeoD-type | / | 0.765 | |
| 1pr5 | TBN | Purine nucleoside phosphorylase DeoD-type | / | 0.762 | |
| 1k9s | FM1 | Purine nucleoside phosphorylase DeoD-type | / | 0.756 | |
| 4tta | FMC | Purine nucleoside phosphorylase DeoD-type | / | 0.755 | |
| 4dae | 6CR | Purine nucleoside phosphorylase DeoD-type | 2.4.2.1 | 0.750 | |
| 1je1 | GMP | Purine nucleoside phosphorylase | / | 0.745 | |
| 1g7u | PEP | 2-dehydro-3-deoxyphosphooctonate aldolase | 2.5.1.55 | 0.744 | |
| 4e5i | 0N9 | Polymerase acidic protein | / | 0.744 | |
| 3uaw | ADN | Purine nucleoside phosphorylase DeoD-type | / | 0.740 | |
| 4tti | FMC | Purine nucleoside phosphorylase DeoD-type | / | 0.735 | |
| 4ttj | FMC | Purine nucleoside phosphorylase DeoD-type | / | 0.730 | |
| 2i4t | UA2 | Purine nucleoside phosphorylase, putative | / | 0.720 | |
| 1y6r | MTM | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | 3.2.2.9 | 0.718 | |
| 2hwu | URI | Uridine phosphorylase | 2.4.2.3 | 0.711 | |
| 3fow | IMH | Purine nucleoside phosphorylase | / | 0.710 | |
| 4bmz | MTA | Aminodeoxyfutalosine nucleosidase | / | 0.710 | |
| 1zos | MTM | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | / | 0.709 | |
| 4da8 | BG2 | Purine nucleoside phosphorylase DeoD-type | 2.4.2.1 | 0.709 | |
| 1pr1 | FMB | Purine nucleoside phosphorylase DeoD-type | / | 0.708 | |
| 3uay | ADN | Purine nucleoside phosphorylase DeoD-type | / | 0.702 | |
| 3eei | MTM | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | / | 0.697 | |
| 1nc1 | MTH | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | 3.2.2.9 | 0.694 | |
| 3uax | NOS | Purine nucleoside phosphorylase DeoD-type | / | 0.690 | |
| 4ts9 | FMC | Purine nucleoside phosphorylase DeoD-type | / | 0.682 | |
| 1nw4 | IMH | Purine nucleoside phosphorylase | / | 0.669 | |
| 1pr4 | MTP | Purine nucleoside phosphorylase DeoD-type | / | 0.668 | |
| 4ts3 | FMC | Purine nucleoside phosphorylase DeoD-type | / | 0.668 | |
| 3c74 | ANU | Uridine phosphorylase | 2.4.2.3 | 0.667 | |
| 2bsx | NOS | Purine nucleoside phosphorylase | / | 0.666 | |
| 1jdv | ADN | Purine nucleoside phosphorylase | / | 0.664 | |
| 4e5f | 0N7 | Polymerase acidic protein | / | 0.660 | |
| 5c80 | URI | Uridine phosphorylase | / | 0.658 | |
| 1odi | ADN | Purine nucleoside phosphorylase | / | 0.654 | |
| 4dan | 2FA | Purine nucleoside phosphorylase DeoD-type | 2.4.2.1 | 0.652 |