2.380 Å
X-ray
2008-02-06
Name: | Uridine phosphorylase |
---|---|
ID: | UDP_SALTY |
AC: | P0A1F6 |
Organism: | Salmonella typhimurium |
Reign: | Bacteria |
TaxID: | 99287 |
EC Number: | 2.4.2.3 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 16 % |
D | 84 % |
B-Factor: | 32.293 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.324 | 938.250 |
% Hydrophobic | % Polar |
---|---|
40.65 | 59.35 |
According to VolSite |
HET Code: | ANU |
---|---|
Formula: | C9H10N2O5 |
Molecular weight: | 226.186 g/mol |
DrugBank ID: | DB04627 |
Buried Surface Area: | 69.33 % |
Polar Surface area: | 91.59 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-7.014 | 26.2443 | 11.7929 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O4 | O | HOH- 208 | 3.22 | 137.61 | H-Bond (Protein Donor) |
O5' | NE2 | HIS- 2008 | 3.11 | 154.14 | H-Bond (Protein Donor) |
C3' | CG2 | ILE- 4069 | 4.31 | 0 | Hydrophobic |
C4' | CG1 | ILE- 4069 | 4.4 | 0 | Hydrophobic |
C5' | CD1 | ILE- 4069 | 4.41 | 0 | Hydrophobic |
C5' | CD2 | PHE- 4162 | 4.06 | 0 | Hydrophobic |
C2' | CB | GLU- 4196 | 4.35 | 0 | Hydrophobic |
C3' | SD | MET- 4197 | 4 | 0 | Hydrophobic |
C2' | CB | MET- 4197 | 4.12 | 0 | Hydrophobic |
O3' | OE1 | GLU- 4198 | 3.36 | 120.45 | H-Bond (Ligand Donor) |
O3' | OE2 | GLU- 4198 | 2.71 | 171.42 | H-Bond (Ligand Donor) |