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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cer NAD Glyceraldehyde-3-phosphate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1cer NADGlyceraldehyde-3-phosphate dehydrogenase / 0.938
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.869
1vsv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.856
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.847
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.837
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.835
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.833
3cps NADGlyceraldehyde-3-phosphate dehydrogenase / 0.827
1a7k NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.825
3pym NADGlyceraldehyde-3-phosphate dehydrogenase 3 1.2.1.12 0.825
1hdg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.824
4p8r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.821
3qv1 NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.820
1nq5 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.814
3dbv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.814
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.812
3v1y NADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic 1.2.1.12 0.812
3zcx NADGlyceraldehyde-3-phosphate dehydrogenase / 0.812
4boy NADGlyceraldehyde-3-phosphate dehydrogenase / 0.812
3b1j NADGlyceraldehyde-3-phosphate dehydrogenase / 0.808
1nbo NADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.799
2vyv NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.797
4lsm NADGlyceraldehyde-3-phosphate dehydrogenase / 0.796
1nqa NADGlyceraldehyde-3-phosphate dehydrogenase / 0.791
3lvf NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.790
1ywg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.789
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.785
4o59 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.785
1nqo NADGlyceraldehyde-3-phosphate dehydrogenase / 0.784
1dc6 NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.782
1rm3 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.781
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.781
1vc2 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.780
2d2i NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.780
4dbv NDPGlyceraldehyde-3-phosphate dehydrogenase / 0.780
2b4r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.776
1gad NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.774
1npt NADGlyceraldehyde-3-phosphate dehydrogenase / 0.774
4k9d NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.774
4o63 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.773
1j0x NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.771
1gyp NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.766
1szj NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.765
2ep7 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.764
3zdf NADGlyceraldehyde-3-phosphate dehydrogenase / 0.764
2vyn NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.760
3ksd NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.760
3dmt NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.758
3k2b NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.752
1znq NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.743
3l4s NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.742
1jn0 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.738
1m76 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.735
1m75 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.732
2dbv NDPGlyceraldehyde-3-phosphate dehydrogenase / 0.727
3b20 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.715
1qxs NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.712
3doc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.712
1dss NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.710
3f3s NADLambda-crystallin homolog / 0.708
3e5r NADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic 1.2.1.12 0.701
1f0y NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.700
1il0 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.698
1nvm NADAcetaldehyde dehydrogenase 1.2.1.10 0.691
3ggp NADPrephenate dehydrogenase / 0.687
4z0h NADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic 1.2.1.12 0.687
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.686
3adp NAILambda-crystallin 1.1.1.45 0.686
1guy NADMalate dehydrogenase / 0.685
3hdh NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.685
1ihx SNDGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.684
1gae NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.682
1gl3 NDPAspartate-semialdehyde dehydrogenase / 0.681
1rm4 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.681
1dbv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.678
2i9p NAD3-hydroxyisobutyrate dehydrogenase, mitochondrial 1.1.1.31 0.678
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.678
2pkr NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.676
1lsj NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.673
4k28 NADShikimate dehydrogenase family protein / 0.673
4om8 NAD3-hydroxybutyryl-coA dehydrogenase / 0.671
1uxk NADMalate dehydrogenase / 0.670
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.670
4lcj NADC-terminal-binding protein 2 / 0.670
1e3l NADAlcohol dehydrogenase 4 1.1.1.1 0.666
1ml3 NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.664
3had NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.664
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.662
2rcy NAPPyrroline-5-carboxylate reductase / 0.662
1lso NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.660
2vhx NADAlanine dehydrogenase 1.4.1.1 0.659
2g5c NADPrephenate dehydrogenase / 0.657
1f17 NAIHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.656
1uxj NADMalate dehydrogenase / 0.656
3anl NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.656
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.655
4j49 NAIUncharacterized protein / 0.655
4j43 NADUncharacterized protein / 0.654
4j4b NAIUncharacterized protein / 0.654
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.653
3gvi ADPMalate dehydrogenase / 0.652
1f8f NADBenzyl alcohol dehydrogenase / 0.651
3ket NADRedox-sensing transcriptional repressor Rex / 0.651
2fze APRAlcohol dehydrogenase class-3 1.1.1.1 0.650
2vhw NAIAlanine dehydrogenase 1.4.1.1 0.650
3ggo NAIPrephenate dehydrogenase / 0.650
3hwr NDP2-dehydropantoate 2-reductase / 0.650