1.800 Å
X-ray
1995-10-24
| Name: | Glyceraldehyde-3-phosphate dehydrogenase A |
|---|---|
| ID: | G3P1_ECOLI |
| AC: | P0A9B2 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| P | 100 % |
| B-Factor: | 22.774 |
|---|---|
| Number of residues: | 45 |
| Including | |
| Standard Amino Acids: | 41 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 4 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.097 | 651.375 |
| % Hydrophobic | % Polar |
|---|---|
| 41.45 | 58.55 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 57.42 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| -12.2441 | 43.4635 | 27.6006 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2A | N | ARG- 10 | 2.95 | 174.42 | H-Bond (Protein Donor) |
| O2N | N | ILE- 11 | 2.79 | 167.1 | H-Bond (Protein Donor) |
| C5D | CG1 | ILE- 11 | 4.48 | 0 | Hydrophobic |
| C4N | CD1 | ILE- 11 | 3.53 | 0 | Hydrophobic |
| O3B | OD2 | ASP- 32 | 2.86 | 169.73 | H-Bond (Ligand Donor) |
| O2B | OD1 | ASP- 32 | 2.7 | 166.2 | H-Bond (Ligand Donor) |
| N6A | O | ARG- 77 | 3.2 | 172 | H-Bond (Ligand Donor) |
| O4D | OG1 | THR- 119 | 3.21 | 155.36 | H-Bond (Protein Donor) |
| C4N | SG | CYS- 149 | 3.9 | 0 | Hydrophobic |
| C5N | CB | CYS- 149 | 4 | 0 | Hydrophobic |
| O7N | ND2 | ASN- 313 | 2.91 | 167.53 | H-Bond (Protein Donor) |
| C5N | CB | TYR- 317 | 4.23 | 0 | Hydrophobic |
| C5N | CD2 | TYR- 317 | 3.35 | 0 | Hydrophobic |
| O2N | O | HOH- 353 | 2.82 | 173.02 | H-Bond (Protein Donor) |
| N1A | O | HOH- 378 | 3.03 | 159.06 | H-Bond (Protein Donor) |