1.800 Å
X-ray
1995-10-24
Name: | Glyceraldehyde-3-phosphate dehydrogenase A |
---|---|
ID: | G3P1_ECOLI |
AC: | P0A9B2 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
P | 100 % |
B-Factor: | 22.774 |
---|---|
Number of residues: | 45 |
Including | |
Standard Amino Acids: | 41 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 4 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.097 | 651.375 |
% Hydrophobic | % Polar |
---|---|
41.45 | 58.55 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 57.42 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
-12.2441 | 43.4635 | 27.6006 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | N | ARG- 10 | 2.95 | 174.42 | H-Bond (Protein Donor) |
O2N | N | ILE- 11 | 2.79 | 167.1 | H-Bond (Protein Donor) |
C5D | CG1 | ILE- 11 | 4.48 | 0 | Hydrophobic |
C4N | CD1 | ILE- 11 | 3.53 | 0 | Hydrophobic |
O3B | OD2 | ASP- 32 | 2.86 | 169.73 | H-Bond (Ligand Donor) |
O2B | OD1 | ASP- 32 | 2.7 | 166.2 | H-Bond (Ligand Donor) |
N6A | O | ARG- 77 | 3.2 | 172 | H-Bond (Ligand Donor) |
O4D | OG1 | THR- 119 | 3.21 | 155.36 | H-Bond (Protein Donor) |
C4N | SG | CYS- 149 | 3.9 | 0 | Hydrophobic |
C5N | CB | CYS- 149 | 4 | 0 | Hydrophobic |
O7N | ND2 | ASN- 313 | 2.91 | 167.53 | H-Bond (Protein Donor) |
C5N | CB | TYR- 317 | 4.23 | 0 | Hydrophobic |
C5N | CD2 | TYR- 317 | 3.35 | 0 | Hydrophobic |
O2N | O | HOH- 353 | 2.82 | 173.02 | H-Bond (Protein Donor) |
N1A | O | HOH- 378 | 3.03 | 159.06 | H-Bond (Protein Donor) |