2.600 Å
X-ray
2001-08-23
Name: | Aspartate-semialdehyde dehydrogenase |
---|---|
ID: | DHAS_ECOLI |
AC: | P0A9Q9 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 91 % |
B | 9 % |
B-Factor: | 28.318 |
---|---|
Number of residues: | 53 |
Including | |
Standard Amino Acids: | 53 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.331 | 428.625 |
% Hydrophobic | % Polar |
---|---|
28.35 | 71.65 |
According to VolSite |
HET Code: | NDP |
---|---|
Formula: | C21H26N7O17P3 |
Molecular weight: | 741.389 g/mol |
DrugBank ID: | DB02338 |
Buried Surface Area: | 62.28 % |
Polar Surface area: | 404.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 22 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
-0.91775 | 51.34 | 11.5007 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1X | CZ | ARG- 10 | 3.68 | 0 | Ionic (Protein Cationic) |
O1X | NH1 | ARG- 10 | 2.92 | 131.49 | H-Bond (Protein Donor) |
O1A | N | MET- 12 | 3.17 | 172.11 | H-Bond (Protein Donor) |
O2N | N | VAL- 13 | 2.67 | 165.2 | H-Bond (Protein Donor) |
C5D | CG2 | VAL- 13 | 4.44 | 0 | Hydrophobic |
C3N | CG2 | VAL- 13 | 3.79 | 0 | Hydrophobic |
O2X | N | THR- 37 | 3.4 | 138.45 | H-Bond (Protein Donor) |
O2X | OG1 | THR- 37 | 2.8 | 150.68 | H-Bond (Protein Donor) |
O3X | OG | SER- 38 | 2.53 | 160.85 | H-Bond (Protein Donor) |
O2X | NE2 | GLN- 73 | 3.17 | 157.37 | H-Bond (Protein Donor) |
C4N | CB | CYS- 135 | 3.71 | 0 | Hydrophobic |
N7N | O | SER- 165 | 2.66 | 156.99 | H-Bond (Ligand Donor) |
O1A | N | ALA- 169 | 3.12 | 168.5 | H-Bond (Protein Donor) |
O7N | NE2 | GLN- 350 | 3.03 | 140.09 | H-Bond (Protein Donor) |
C4N | CG | GLN- 350 | 4.43 | 0 | Hydrophobic |
C5N | CB | ALA- 355 | 3.74 | 0 | Hydrophobic |
C4N | SG | CYS- 501 | 3.44 | 0 | Hydrophobic |