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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gl3 NDP Aspartate-semialdehyde dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gl3 NDPAspartate-semialdehyde dehydrogenase / 1.009
4p8r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.698
1dc6 NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.695
4lsm NADGlyceraldehyde-3-phosphate dehydrogenase / 0.694
1cf2 NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.692
3k2b NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.684
5ein NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.682
1cer NADGlyceraldehyde-3-phosphate dehydrogenase / 0.681
1vsv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.680
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.680
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.679
1nq5 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.678
1nvm NADAcetaldehyde dehydrogenase 1.2.1.10 0.678
4o59 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.676
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.675
4dbv NDPGlyceraldehyde-3-phosphate dehydrogenase / 0.675
3dmt NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.674
3pzr NAPAspartate-semialdehyde dehydrogenase 1 / 0.673
3b20 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.672
3hwr NDP2-dehydropantoate 2-reductase / 0.671
3cps NADGlyceraldehyde-3-phosphate dehydrogenase / 0.670
3w6u NAP6-phosphogluconate dehydrogenase, NAD-binding protein / 0.669
3zcx NADGlyceraldehyde-3-phosphate dehydrogenase / 0.669
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.666
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.664
2glx NDP1,5-anhydro-D-fructose reductase / 0.664
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.663
3f3s NADLambda-crystallin homolog / 0.662
4k9d NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.662
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.662
2ep7 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.661
1nbo NADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.660
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.660
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.660
4dpl NAPMalonyl-CoA reductase 1.2.1.75 0.659
1dss NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.658
2d2i NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.658
4o63 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.658
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.655
2dbv NDPGlyceraldehyde-3-phosphate dehydrogenase / 0.654
1il0 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.653
1jn0 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.653
3b1j NADGlyceraldehyde-3-phosphate dehydrogenase / 0.653
3keo NADRedox-sensing transcriptional repressor Rex / 0.651
1a7k NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.650
1nqo NADGlyceraldehyde-3-phosphate dehydrogenase / 0.650