3.000 Å
X-ray
2001-07-21
Name: | Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic |
---|---|
ID: | G3PA_SPIOL |
AC: | P19866 |
Organism: | Spinacia oleracea |
Reign: | Eukaryota |
TaxID: | 3562 |
EC Number: | 1.2.1.13 |
Chain Name: | Percentage of Residues within binding site |
---|---|
O | 100 % |
B-Factor: | 38.569 |
---|---|
Number of residues: | 48 |
Including | |
Standard Amino Acids: | 47 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.844 | 759.375 |
% Hydrophobic | % Polar |
---|---|
42.22 | 57.78 |
According to VolSite |
HET Code: | NDP |
---|---|
Formula: | C21H26N7O17P3 |
Molecular weight: | 741.389 g/mol |
DrugBank ID: | DB02338 |
Buried Surface Area: | 49.69 % |
Polar Surface area: | 404.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 22 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
63.5948 | 71.0385 | 46.7789 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | N | ARG- 10 | 3.14 | 163.74 | H-Bond (Protein Donor) |
O2N | N | ILE- 11 | 2.99 | 168.33 | H-Bond (Protein Donor) |
C3N | CG1 | ILE- 11 | 3.56 | 0 | Hydrophobic |
C4N | CD1 | ILE- 11 | 3.24 | 0 | Hydrophobic |
N6A | O | ARG- 77 | 3.06 | 148.47 | H-Bond (Ligand Donor) |
C1B | CB | THR- 96 | 4.28 | 0 | Hydrophobic |
C3D | CB | ALA- 120 | 4.45 | 0 | Hydrophobic |
C4N | CB | CYS- 149 | 3.78 | 0 | Hydrophobic |
C5N | CD2 | TYR- 317 | 3.29 | 0 | Hydrophobic |
C5N | CB | TYR- 317 | 4.03 | 0 | Hydrophobic |
O2N | O | HOH- 6345 | 2.99 | 161.19 | H-Bond (Protein Donor) |