3.000 Å
X-ray
2001-07-21
| Name: | Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic |
|---|---|
| ID: | G3PA_SPIOL |
| AC: | P19866 |
| Organism: | Spinacia oleracea |
| Reign: | Eukaryota |
| TaxID: | 3562 |
| EC Number: | 1.2.1.13 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| O | 100 % |
| B-Factor: | 38.569 |
|---|---|
| Number of residues: | 48 |
| Including | |
| Standard Amino Acids: | 47 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.844 | 759.375 |
| % Hydrophobic | % Polar |
|---|---|
| 42.22 | 57.78 |
| According to VolSite | |

| HET Code: | NDP |
|---|---|
| Formula: | C21H26N7O17P3 |
| Molecular weight: | 741.389 g/mol |
| DrugBank ID: | DB02338 |
| Buried Surface Area: | 49.69 % |
| Polar Surface area: | 404.9 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 22 |
| H-Bond Donors: | 5 |
| Rings: | 5 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 13 |
| X | Y | Z |
|---|---|---|
| 63.5948 | 71.0385 | 46.7789 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2A | N | ARG- 10 | 3.14 | 163.74 | H-Bond (Protein Donor) |
| O2N | N | ILE- 11 | 2.99 | 168.33 | H-Bond (Protein Donor) |
| C3N | CG1 | ILE- 11 | 3.56 | 0 | Hydrophobic |
| C4N | CD1 | ILE- 11 | 3.24 | 0 | Hydrophobic |
| N6A | O | ARG- 77 | 3.06 | 148.47 | H-Bond (Ligand Donor) |
| C1B | CB | THR- 96 | 4.28 | 0 | Hydrophobic |
| C3D | CB | ALA- 120 | 4.45 | 0 | Hydrophobic |
| C4N | CB | CYS- 149 | 3.78 | 0 | Hydrophobic |
| C5N | CD2 | TYR- 317 | 3.29 | 0 | Hydrophobic |
| C5N | CB | TYR- 317 | 4.03 | 0 | Hydrophobic |
| O2N | O | HOH- 6345 | 2.99 | 161.19 | H-Bond (Protein Donor) |