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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iwjNADAminoaldehyde dehydrogenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3iwjNADAminoaldehyde dehydrogenase/1.000
3iwkNADAminoaldehyde dehydrogenase/0.626
4v37NADBetaine aldehyde dehydrogenase, chloroplastic1.2.1.80.617
1o01NADAldehyde dehydrogenase, mitochondrial1.2.1.30.605
4pxlNADAldehyde dehydrogenase3/0.586
1nzxNADAldehyde dehydrogenase, mitochondrial1.2.1.30.568
1o02NADAldehyde dehydrogenase, mitochondrial1.2.1.30.560
4fqfNADAldehyde dehydrogenase, mitochondrial1.2.1.30.559
2ehuNAD1-pyrroline-5-carboxylate dehydrogenase/0.558
3n82NADAldehyde dehydrogenase, mitochondrial1.2.1.30.552
2onmADPAldehyde dehydrogenase, mitochondrial1.2.1.30.551
1o00NADAldehyde dehydrogenase, mitochondrial1.2.1.30.547
2bjaNAD1-pyrroline-5-carboxylate dehydrogenase/0.545
2onpNADAldehyde dehydrogenase, mitochondrial1.2.1.30.545
1nzzNAIAldehyde dehydrogenase, mitochondrial1.2.1.30.543
1cw3NADAldehyde dehydrogenase, mitochondrial1.2.1.30.542
2j5nNAD1-pyrroline-5-carboxylate dehydrogenase/0.542
3n83ADPAldehyde dehydrogenase, mitochondrial1.2.1.30.540
5eyuNADBetaine-aldehyde dehydrogenase/0.540
2j40NAD1-pyrroline-5-carboxylate dehydrogenase/0.533
3ju8NADN-succinylglutamate 5-semialdehyde dehydrogenase1.2.1.710.533
4fr8NADAldehyde dehydrogenase, mitochondrial1.2.1.30.530
2bhpNAD1-pyrroline-5-carboxylate dehydrogenase/0.528
4h73NDPAldehyde dehydrogenase/0.528
4x4lNAIRetinal dehydrogenase 11.2.1.360.524
2onmNADAldehyde dehydrogenase, mitochondrial1.2.1.30.522
2eiiNAD1-pyrroline-5-carboxylate dehydrogenase/0.520
1nzwNAIAldehyde dehydrogenase, mitochondrial1.2.1.30.519
4fr8ADPAldehyde dehydrogenase, mitochondrial1.2.1.30.519
2ehqNAP1-pyrroline-5-carboxylate dehydrogenase/0.518
4x2qNADRetinal dehydrogenase 21.2.1.360.517
1o04NADAldehyde dehydrogenase, mitochondrial1.2.1.30.516
4i9bNADPutative betaine aldehyde dehyrogenase/0.509
4i3vNADAldehyde dehydrogenase (NAD+)/0.500
4i1wNAD2-aminomuconate 6-semialdehyde dehydrogenase/0.489
3v9lNADDelta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial1.2.1.880.487
2wmeNAPNAD/NADP-dependent betaine aldehyde dehydrogenase/0.482
4wb9NAIRetinal dehydrogenase 11.2.1.360.479
4nmkNAPAldehyde dehydrogenase/0.478
4oe2NAD2-aminomuconate 6-semialdehyde dehydrogenase/0.478
4f3xNADPutative aldehyde dehydrogenase/0.477
4nmjNAPAldehyde dehydrogenase/0.474
1bpwNADBetaine aldehyde dehydrogenase1.2.1.80.468
1bxsNADRetinal dehydrogenase 11.2.1.360.466
3rhhNAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase/0.466
1ad3NADAldehyde dehydrogenase, dimeric NADP-preferring/0.465
4zukNADAlpha-aminoadipic semialdehyde dehydrogenase1.2.1.310.464
4zz7NADMethylmalonate-semialdehyde dehydrogenase/0.462
4pt3NDPAldehyde dehydrogenase/0.455
3rhdNAPLactaldehyde dehydrogenase1.2.1.220.453
2d4eNAD5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseiheyensis HTE831]/0.452