2.600 Å
X-ray
1996-06-25
Name: | Aldehyde dehydrogenase, dimeric NADP-preferring |
---|---|
ID: | AL3A1_RAT |
AC: | P11883 |
Organism: | Rattus norvegicus |
Reign: | Eukaryota |
TaxID: | 10116 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 15.931 |
---|---|
Number of residues: | 43 |
Including | |
Standard Amino Acids: | 43 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.150 | 783.000 |
% Hydrophobic | % Polar |
---|---|
54.31 | 45.69 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 51.9 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
49.316 | 67.2603 | 44.1866 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1N | NE1 | TRP- 113 | 3.08 | 156.64 | H-Bond (Protein Donor) |
O3B | OE2 | GLU- 140 | 3.19 | 129.54 | H-Bond (Ligand Donor) |
O3B | OE1 | GLU- 140 | 2.63 | 162.62 | H-Bond (Ligand Donor) |
O2B | OE2 | GLU- 140 | 2.74 | 150.36 | H-Bond (Ligand Donor) |
C3B | CG2 | VAL- 141 | 4.28 | 0 | Hydrophobic |
C2B | CG2 | VAL- 169 | 3.74 | 0 | Hydrophobic |
O2A | NE2 | HIS- 289 | 3.46 | 147.26 | H-Bond (Protein Donor) |
O3 | NE2 | HIS- 289 | 3.17 | 136.32 | H-Bond (Protein Donor) |
C3D | CD | ARG- 292 | 3.92 | 0 | Hydrophobic |
C2D | CB | PHE- 335 | 4.18 | 0 | Hydrophobic |