2.600 Å
X-ray
1996-06-25
| Name: | Aldehyde dehydrogenase, dimeric NADP-preferring |
|---|---|
| ID: | AL3A1_RAT |
| AC: | P11883 |
| Organism: | Rattus norvegicus |
| Reign: | Eukaryota |
| TaxID: | 10116 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 15.931 |
|---|---|
| Number of residues: | 43 |
| Including | |
| Standard Amino Acids: | 43 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.150 | 783.000 |
| % Hydrophobic | % Polar |
|---|---|
| 54.31 | 45.69 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 51.9 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 49.316 | 67.2603 | 44.1866 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1N | NE1 | TRP- 113 | 3.08 | 156.64 | H-Bond (Protein Donor) |
| O3B | OE2 | GLU- 140 | 3.19 | 129.54 | H-Bond (Ligand Donor) |
| O3B | OE1 | GLU- 140 | 2.63 | 162.62 | H-Bond (Ligand Donor) |
| O2B | OE2 | GLU- 140 | 2.74 | 150.36 | H-Bond (Ligand Donor) |
| C3B | CG2 | VAL- 141 | 4.28 | 0 | Hydrophobic |
| C2B | CG2 | VAL- 169 | 3.74 | 0 | Hydrophobic |
| O2A | NE2 | HIS- 289 | 3.46 | 147.26 | H-Bond (Protein Donor) |
| O3 | NE2 | HIS- 289 | 3.17 | 136.32 | H-Bond (Protein Donor) |
| C3D | CD | ARG- 292 | 3.92 | 0 | Hydrophobic |
| C2D | CB | PHE- 335 | 4.18 | 0 | Hydrophobic |