2.400 Å
X-ray
2009-09-02
Name: | Aminoaldehyde dehydrogenase |
---|---|
ID: | Q8VWZ1_PEA |
AC: | Q8VWZ1 |
Organism: | Pisum sativum |
Reign: | Eukaryota |
TaxID: | 3888 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
F | 100 % |
B-Factor: | 27.921 |
---|---|
Number of residues: | 41 |
Including | |
Standard Amino Acids: | 40 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.962 | 891.000 |
% Hydrophobic | % Polar |
---|---|
41.67 | 58.33 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 48.78 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
16.9349 | 14.4988 | 14.2645 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5N | CB | PRO- 160 | 3.37 | 0 | Hydrophobic |
C2D | CZ2 | TRP- 161 | 4.18 | 0 | Hydrophobic |
C4B | CB | HIS- 219 | 4.39 | 0 | Hydrophobic |
C1B | CB | HIS- 219 | 4.21 | 0 | Hydrophobic |
N6A | O | GLY- 222 | 3.37 | 122.37 | H-Bond (Ligand Donor) |
C4D | CB | SER- 239 | 4.44 | 0 | Hydrophobic |
O1N | OG1 | THR- 242 | 3.35 | 149.52 | H-Bond (Protein Donor) |
O3B | NZ | LYS- 245 | 3.29 | 120.58 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 245 | 2.73 | 167.91 | H-Bond (Protein Donor) |
C2B | CD | LYS- 245 | 4.47 | 0 | Hydrophobic |
C4N | SG | CYS- 294 | 4.26 | 0 | Hydrophobic |