2.400 Å
X-ray
2009-09-02
| Name: | Aminoaldehyde dehydrogenase |
|---|---|
| ID: | Q8VWZ1_PEA |
| AC: | Q8VWZ1 |
| Organism: | Pisum sativum |
| Reign: | Eukaryota |
| TaxID: | 3888 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| F | 100 % |
| B-Factor: | 27.921 |
|---|---|
| Number of residues: | 41 |
| Including | |
| Standard Amino Acids: | 40 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.962 | 891.000 |
| % Hydrophobic | % Polar |
|---|---|
| 41.67 | 58.33 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 48.78 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 16.9349 | 14.4988 | 14.2645 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5N | CB | PRO- 160 | 3.37 | 0 | Hydrophobic |
| C2D | CZ2 | TRP- 161 | 4.18 | 0 | Hydrophobic |
| C4B | CB | HIS- 219 | 4.39 | 0 | Hydrophobic |
| C1B | CB | HIS- 219 | 4.21 | 0 | Hydrophobic |
| N6A | O | GLY- 222 | 3.37 | 122.37 | H-Bond (Ligand Donor) |
| C4D | CB | SER- 239 | 4.44 | 0 | Hydrophobic |
| O1N | OG1 | THR- 242 | 3.35 | 149.52 | H-Bond (Protein Donor) |
| O3B | NZ | LYS- 245 | 3.29 | 120.58 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 245 | 2.73 | 167.91 | H-Bond (Protein Donor) |
| C2B | CD | LYS- 245 | 4.47 | 0 | Hydrophobic |
| C4N | SG | CYS- 294 | 4.26 | 0 | Hydrophobic |