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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.291.000
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.596
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.579
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.559
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.559
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.552
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.534
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.531
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.527
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.526
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.520
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.514
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.510
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.508
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.504
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.504
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.504
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.501
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.498
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.494
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.492
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.490
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.488
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.482
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.479
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.479
2g28TDKPyruvate dehydrogenase E1 component1.2.4.10.468
2ourCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.466
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.466
4iarERM5-hydroxytryptamine receptor 1B/0.465
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.464
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.461
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.460
5dp2NAPCurF/0.459
3ai3NDPNADPH-sorbose reductase/0.454
2c94TSF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.453
3gjwGJWPoly [ADP-ribose] polymerase 12.4.2.300.453
3vv8B02Beta-secretase 13.4.23.460.453
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.452
3ai2NDPNADPH-sorbose reductase/0.452
1fmlRTLRetinol dehydratase/0.451
3imgBZ2Pantothenate synthetase6.3.2.10.450
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.450
3imgBZ3Pantothenate synthetase6.3.2.10.448
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.447
2fhjMFNFormylmethanofuran--tetrahydromethanopterin formyltransferase2.3.1.1010.446
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.445
2hxzH7JCathepsin S3.4.22.270.442
4iaq2GM5-hydroxytryptamine receptor 1B/0.441
4rh10TTSpore photoproduct lyase/0.440