2.600 Å
X-ray
2014-10-01
Name: | Spore photoproduct lyase |
---|---|
ID: | A4IQU1_GEOTN |
AC: | A4IQU1 |
Organism: | Geobacillus thermodenitrificans |
Reign: | Bacteria |
TaxID: | 420246 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 40.100 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.202 | 847.125 |
% Hydrophobic | % Polar |
---|---|
48.21 | 51.79 |
According to VolSite |
HET Code: | 0TT |
---|---|
Formula: | C20H28N4O10 |
Molecular weight: | 484.457 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 57.72 % |
Polar Surface area: | 198.19 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 6 |
Rings: | 4 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-20.8576 | -1.36891 | 23.5228 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CH | SG | CYS- 76 | 4.12 | 0 | Hydrophobic |
N2 | O | LYS- 77 | 2.73 | 157.37 | H-Bond (Ligand Donor) |
O4 | N | SER- 79 | 3.3 | 142.11 | H-Bond (Protein Donor) |
C8 | CD1 | TYR- 98 | 3.32 | 0 | Hydrophobic |
CA | CE1 | TYR- 98 | 3.65 | 0 | Hydrophobic |
O1 | OG1 | THR- 102 | 3.16 | 156.21 | H-Bond (Ligand Donor) |
CH | CG | GLU- 137 | 4.28 | 0 | Hydrophobic |
CH | CB | ALA- 140 | 4.27 | 0 | Hydrophobic |
C1 | CG1 | VAL- 172 | 3.64 | 0 | Hydrophobic |
O6 | NH1 | ARG- 193 | 3.25 | 174.08 | H-Bond (Protein Donor) |
C3 | CG2 | ILE- 270 | 3.68 | 0 | Hydrophobic |
C4 | CD | ARG- 273 | 3.93 | 0 | Hydrophobic |
N4 | OH | TYR- 339 | 2.75 | 169.22 | H-Bond (Ligand Donor) |